View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_low_6 (Length: 395)
Name: NF2995_low_6
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 41686068 - 41686442
Alignment:
| Q |
6 |
tggacatcatcacacactatacttcattcaaatcaacttgatatacaaatttatggtacaactacatccccttttgtacgcaaaatactacaacttaata |
105 |
Q |
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| T |
41686068 |
tggacattatcacacagtatacttcattcaaatcaacttgatatacaaatttatggtacaactacatccccttttgtacgcaaaatactacaacttaata |
41686167 |
T |
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| Q |
106 |
acaaagaggaaatcacatttccatgttaagctatctagaaatctacataaacatttatccgatctttacttgtatcgaagtcaatgtttataaaacagga |
205 |
Q |
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| T |
41686168 |
acaaagaggaaatcacatttccatgttaagctatctagaaatctacataaacatttatccgatctttacttgtatcgaagtcaatgtttataaaacagga |
41686267 |
T |
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| Q |
206 |
ttggaaaaaatgcatagtttataggaaccataagagatacatgcagaatttttatacctgatgatgattcaccttgagcatccttcaactttctcagctc |
305 |
Q |
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| T |
41686268 |
ttggaaaaaatgcatag-ttataggaatcataagagatacatgcagaatttttatacctgatgatgattcatctggagcatccttcaactttctcagctc |
41686366 |
T |
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| Q |
306 |
acgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttt |
381 |
Q |
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| T |
41686367 |
acgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttt |
41686442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 41659168 - 41659330
Alignment:
| Q |
122 |
atttccatgttaagctatctagaaatctacataaacatttatccgatctttacttgtatcgaagtcaatgtttataaaacaggattggaaaaaatgcata |
221 |
Q |
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| T |
41659168 |
atttccatgccaagctatctaaaaaactacacgagcatttatccgatcaccacttgtattgaattcgatatttataaagcagcattgtaaaa-atgcata |
41659266 |
T |
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| Q |
222 |
gtttataggaaccataagagatacatgcagaatttttatacctgatgatgattcaccttgagca |
285 |
Q |
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| T |
41659267 |
gtttataggaatcataggagatacatgcagaactctcatacctgatgatgattcaccttgagca |
41659330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 41708728 - 41708802
Alignment:
| Q |
286 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtct |
360 |
Q |
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| T |
41708728 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtct |
41708802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 41717800 - 41717874
Alignment:
| Q |
286 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtct |
360 |
Q |
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| T |
41717800 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtct |
41717874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 380
Target Start/End: Original strand, 41659357 - 41659449
Alignment:
| Q |
288 |
cttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagtttt |
380 |
Q |
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| T |
41659357 |
cttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctccttcaactaaactagtttt |
41659449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 41687982 - 41687890
Alignment:
| Q |
289 |
ttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttt |
381 |
Q |
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| T |
41687982 |
ttcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctctcaatcaaactagttttt |
41687890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 41659005 - 41659072
Alignment:
| Q |
28 |
ttcattcaaatcaacttgatatacaaatttatggtacaactacatccccttttgtacgcaaaatactac |
96 |
Q |
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| T |
41659005 |
ttcattcaaatcaa-ttgatatataaattcatggtataactacatccccttttatagacaaaatactac |
41659072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 339
Target Start/End: Original strand, 41504162 - 41504192
Alignment:
| Q |
309 |
aacttctaactccaattcactgttcttcttt |
339 |
Q |
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| T |
41504162 |
aacttctaactccaattcactgttcttcttt |
41504192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 41469092 - 41469124
Alignment:
| Q |
258 |
tatacctgatgatgattcaccttgagcatcctt |
290 |
Q |
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| T |
41469092 |
tatacctgatgatgatgcaccttgagcatcctt |
41469124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 2439283 - 2439246
Alignment:
| Q |
236 |
taagagatacatgcagaatttttatacctgatgatgat |
273 |
Q |
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| T |
2439283 |
taagagatacatacagaattttcatacctgatgatgat |
2439246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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