View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_low_7 (Length: 354)
Name: NF2995_low_7
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 336
Target Start/End: Original strand, 3934654 - 3934980
Alignment:
| Q |
10 |
aggagcagagatggacttgtatcaccacggtggggatgggggatggagacgcacgccagcagggggcatgttgtaggagtagatgcaaatggtaaactaa |
109 |
Q |
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| T |
3934654 |
aggatcagagatggacttgtatcaccaaggtggggatgggggatggagacgcacgccagcagggggcatgttgtaggagtagatgcaaatggtaaactaa |
3934753 |
T |
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| Q |
110 |
gaataagatttcgatggagggaagggaggagaccttggataggagaccctgctgatattgctcttgatgagaactga-ataaaactttataggaacatgg |
208 |
Q |
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| T |
3934754 |
gaataagatttcgatggagggaag---ggagaccttggataggagaccctgctgatattgctcttgatgagaactgatgtaaaactttttaggaacatgg |
3934850 |
T |
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| Q |
209 |
aagcttgtatcatcataacttgattttctcattc--agatctttggcctattgcttttctgggtctgttcttgtgcaagaaatcgaaatctttatgtgac |
306 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3934851 |
aagcttgtatcatcataacttgattttctcattcagagatctttggcctattgcttttctgggtccgttcttgtgcaagaaatcgaaatctttatgtgac |
3934950 |
T |
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| Q |
307 |
ctgctaccgcatgtgctctgaactatgtaa |
336 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3934951 |
ctgctaccgcatgtgctctgaactatgtaa |
3934980 |
T |
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