View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_high_10 (Length: 347)
Name: NF2996_high_10
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 45305953 - 45305641
Alignment:
| Q |
18 |
ataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattccacgctnnnnnnnnnnnnnnnncttaaagcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45305953 |
ataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattccacgcttctctctctccctc--cttaaagcc |
45305856 |
T |
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| Q |
118 |
tagtcaacctcatctctatcttttgtcccatattcatccaacaatattataccattctctctccctctcttgcaattcatgtgacctagaagaagagttc |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45305855 |
tagtcaacctcatctc-atcttttgtcccatattcatccaacaatattataccattctctctc------ttgcaattcatgtgacctagaagaagagttc |
45305763 |
T |
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| Q |
218 |
attctattcagtcatcaatctcc--ctcctcaactaattaacaatggttatggtttttgttattaccatctcatagcagcatcaatcaacctatatatgc |
315 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305762 |
attctattcagtcatcaatctccatctcctcaactaattaacaatggttatggtttttgttattaccatctcatagcagcatcaatcaacctatatatgc |
45305663 |
T |
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| Q |
316 |
catatatatgcacccttttcat |
337 |
Q |
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|||||||||||||||||||||| |
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| T |
45305662 |
catatatatgcacccttttcat |
45305641 |
T |
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