View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_high_12 (Length: 254)
Name: NF2996_high_12
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 25043108 - 25043294
Alignment:
| Q |
56 |
agaagagacaaaacat-agagaagtgaaaactggactatgcttgtgtccactcctttggagcatgttatgttttcaaaagcctaaatatccaattttgaa |
154 |
Q |
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| T |
25043108 |
agaagagacaaaacatgagagaagtgaaaactggactatgcttgtgtccactcctttggagcatgttatgttttcaaaagcctaaatatccaattttgca |
25043207 |
T |
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| Q |
155 |
cataaagaatgtaagatgcataaattatattaacaatatttaaatagatttataaaattgaaaagatgttaataagatgtatatctc |
241 |
Q |
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| T |
25043208 |
cataaagaatgtaagatgcataaattatattaacaatatttaaatagatttataaaattgaaaagatgttaataagatgtatatctc |
25043294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 25020562 - 25020688
Alignment:
| Q |
114 |
agcatgttatgttttcaaaagcctaaatatccaattttgaacataaagaatgtaagatgcataaattatattaacaatatttaaata-gatttataaaat |
212 |
Q |
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| T |
25020562 |
agcatgttatgttttaaaaggagtaagtatacaatttcatacatacataatgtaa--tgcataaattataatgacaatattttaaaatgatttctaaagt |
25020659 |
T |
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| Q |
213 |
tgaaaagatgttaataagatgtatatctc |
241 |
Q |
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| T |
25020660 |
tgaaaagatgttaataagatgcatatctc |
25020688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 25020498 - 25020547
Alignment:
| Q |
79 |
tgaaaactggactatgcttgtgtccactcctttggagcatgttatgtttt |
128 |
Q |
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| T |
25020498 |
tgaaaattggagtatgctagtgtccactcctttggaacatgttatgtttt |
25020547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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