View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2996_high_13 (Length: 250)

Name: NF2996_high_13
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2996_high_13
NF2996_high_13
[»] chr7 (1 HSPs)
chr7 (4-242)||(14324163-14324399)
[»] chr3 (4 HSPs)
chr3 (4-242)||(14683599-14683836)
chr3 (4-237)||(7341919-7342148)
chr3 (48-236)||(10791956-10792142)
chr3 (138-236)||(10170595-10170693)
[»] scaffold0101 (2 HSPs)
scaffold0101 (7-236)||(46723-46950)
scaffold0101 (7-236)||(51361-51588)
[»] chr1 (2 HSPs)
chr1 (7-236)||(22085853-22086080)
chr1 (54-242)||(41369156-41369343)
[»] scaffold0051 (1 HSPs)
scaffold0051 (9-236)||(79249-79474)
[»] chr8 (2 HSPs)
chr8 (51-242)||(1734756-1734946)
chr8 (138-229)||(22333983-22334073)
[»] chr2 (7 HSPs)
chr2 (100-242)||(24950578-24950719)
chr2 (4-102)||(24953914-24954011)
chr2 (34-236)||(23190688-23190890)
chr2 (34-236)||(23611943-23612145)
chr2 (9-236)||(22648010-22648235)
chr2 (138-236)||(23615702-23615800)
chr2 (9-95)||(23615567-23615651)
[»] scaffold0323 (1 HSPs)
scaffold0323 (9-236)||(3983-4207)
[»] chr6 (2 HSPs)
chr6 (139-236)||(23496009-23496106)
chr6 (138-236)||(19025959-19026057)
[»] scaffold0193 (1 HSPs)
scaffold0193 (138-232)||(27343-27436)
[»] scaffold0081 (1 HSPs)
scaffold0081 (138-236)||(44829-44926)
[»] chr4 (4 HSPs)
chr4 (138-236)||(13277798-13277897)
chr4 (152-231)||(14557478-14557557)
chr4 (7-74)||(14557327-14557392)
chr4 (9-45)||(13277658-13277693)
[»] scaffold1701 (1 HSPs)
scaffold1701 (188-242)||(1403-1457)
[»] scaffold0040 (2 HSPs)
scaffold0040 (138-236)||(40791-40889)
scaffold0040 (9-74)||(40965-41029)
[»] scaffold0026 (1 HSPs)
scaffold0026 (136-229)||(118869-118961)
[»] scaffold0001 (1 HSPs)
scaffold0001 (139-236)||(115915-116011)
[»] chr5 (1 HSPs)
chr5 (138-236)||(21529767-21529864)
[»] scaffold0270 (1 HSPs)
scaffold0270 (9-74)||(15652-15715)
[»] scaffold0108 (1 HSPs)
scaffold0108 (9-188)||(43712-43888)
[»] scaffold0023 (1 HSPs)
scaffold0023 (138-229)||(84504-84594)
[»] scaffold0241 (1 HSPs)
scaffold0241 (138-228)||(24555-24644)
[»] scaffold0022 (2 HSPs)
scaffold0022 (102-236)||(57955-58092)
scaffold0022 (9-45)||(58159-58194)
[»] scaffold0304 (2 HSPs)
scaffold0304 (138-229)||(6359-6450)
scaffold0304 (9-74)||(6224-6288)
[»] scaffold0130 (1 HSPs)
scaffold0130 (136-229)||(29902-29994)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 14324163 - 14324399
Alignment:
Q  4 tttaggagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaa 103  Q
    |||||||||||||||||||||||||||  || | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14324163 tttaggagaaacttgacgtttctgaaaaattct-gatgaagtgcatttcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaa 14324261  T
Q  104 ccgtcttcataaggacttagtgggccataccgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctat 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  14324262 ccgtcttcataaagacttagtgggccataccgtcattgggaaccatc-aaaaacaactgttccatgcgatgattgacatctgttcagtatcaaaagctat 14324360  T
Q  204 gtatgaccctgagtcatacttttactcttacttcatttc 242  Q
     ||||||||||||||||||||||||| ||||||| ||||    
T  14324361 atatgaccctgagtcatacttttacttttacttcgtttc 14324399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 14683599 - 14683836
Alignment:
Q  4 tttaggagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaa 103  Q
    |||||||||||||||||||||||||||  ||  |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||  || |||    
T  14683599 tttaggagaaacttgacgtttctgaaaagttc-cgatgaagtgcaattcctcagcatgacctcattcttttgacgacgggatatttcaaaagacgcggaa 14683697  T
Q  104 ccgtcttcataaggacttagtgggccataccgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctat 203  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14683698 ccatcttcataaggacttagtgggtcataccgtcattgggaaccatcaaaaaacaactgttccatgcgatgattgacatctgtccagtatcaaaagctat 14683797  T
Q  204 gtatgaccctgagtcatacttttactcttacttcatttc 242  Q
     ||||||||||||||||||||||||||||||||||||||    
T  14683798 atatgaccctgagtcatacttttactcttacttcatttc 14683836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 7341919 - 7342148
Alignment:
Q  4 tttaggagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaa-ggtgcaga 102  Q
    |||||||||||||||||||||||||||  |    | | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  7341919 tttaggagaaacttgacgtttctgaaaagt----ggtgaagtgcaattcctcagcatgacatcactcttttgacaacgggatatttcaaaaaggtgtaga 7342014  T
Q  103 accgtcttcataaggacttagtgggccataccgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagcta 202  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||    
T  7342015 accgtcttcataaagacttagtgggccataccgtcattgggaactatcaaaaa-caaccgttccatgcgatgattgacatctgtccaatatcaaaagcta 7342113  T
Q  203 tgtatgaccctgagtcatacttttactcttacttc 237  Q
    | ||||||||||||||||| ||||||| |||||||    
T  7342114 tatatgaccctgagtcatatttttacttttacttc 7342148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 10792142 - 10791956
Alignment:
Q  48 aattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtcttcataaggacttagtgggccataccgtcattgggaacc 147  Q
    ||||||| ||||||||||||||||||||  || |||||||   ||||| || ||||||||| |||||| ||||||||||||||||||| |||| |||| |    
T  10792142 aattccttagcatgacatcattcttttggaaatgggatatcaaaaaag-tgtagaaccgtcatcataaagacttagtgggccataccgccatttggaatc 10792044  T
Q  148 atcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    |||||||| |||||  |||| ||||||||||||||||||||||||||||||| ||| ||||||   ||||||||||||| |||||||||    
T  10792043 atcaaaaa-caactgctccacgcgatgattgacatctgtccagtatcaaaagttatatatgactgcgagtcatacttttgctcttactt 10791956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 10170693 - 10170595
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||| |||| |  |||||| ||||| ||| ||||| ||||||||||||||||| ||||    
T  10170693 attgggaactatcaaaaaacaactgttccatgcgatggttgacatttgtcaaacatcaaaggctatatataaccctaagtcatacttttactctcactt 10170595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 46723 - 46950
Alignment:
Q  7 aggagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccg 106  Q
    |||||||||||||||||||||||| |||  |||||||||   | ||||||||||||||||| |||||| || ||||||||||| ||||||| || |||||    
T  46723 aggagaaacttgacgtttctgaaaatttc-cgataaagtatgactcctcagcatgacatcactcttttaactacgggatatttgaaaaggttcaaaaccg 46821  T
Q  107 tcttcataaggacttagtgggccataccgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgta 206  Q
     |||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  |||||||||||| ||    
T  46822 ccttcatcaggacttagtgggccatgccgtcattgggaaccatc-aaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaagctatata 46920  T
Q  207 tgaccctgagtcatacttttactcttactt 236  Q
    ||||||||||||||||||||||||||||||    
T  46921 tgaccctgagtcatacttttactcttactt 46950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 51361 - 51588
Alignment:
Q  7 aggagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccg 106  Q
    |||||||||||||||||||||||| |||  |||||||||   | ||||||||||||||||| |||||| || ||||||||||| ||||||| || |||||    
T  51361 aggagaaacttgacgtttctgaaaatttc-cgataaagtatgactcctcagcatgacatcactcttttaactacgggatatttgaaaaggttcaaaaccg 51459  T
Q  107 tcttcataaggacttagtgggccataccgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgta 206  Q
     |||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  |||||||||||| ||    
T  51460 ccttcatcaggacttagtgggccatgccgtcattgggaaccatc-aaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaagctatata 51558  T
Q  207 tgaccctgagtcatacttttactcttactt 236  Q
    ||||||||||||||||||||||||||||||    
T  51559 tgaccctgagtcatacttttactcttactt 51588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 22086080 - 22085853
Alignment:
Q  7 aggagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccg 106  Q
    |||||||||||||||||| ||||| |||  |||||||||   | ||||||||||||||||  |||||| |||||||||||||| ||||||| || |||||    
T  22086080 aggagaaacttgacgtttttgaaaatttc-cgataaagtatgactcctcagcatgacatcgctcttttaacaacgggatatttgaaaaggttcaaaaccg 22085982  T
Q  107 tcttcataaggacttagtgggccataccgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgta 206  Q
     |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||  |||||||||||| ||    
T  22085981 ccttcatcaggacttagtgggccatgccgtcattgggaaccatcaaaaa-caactgttccatgcgatgattgacatctgtccaacatcaaaagctatata 22085883  T
Q  207 tgaccctgagtcatacttttactcttactt 236  Q
    ||||||||||||||||||||||||||||||    
T  22085882 tgaccctgagtcatacttttactcttactt 22085853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 41369156 - 41369343
Alignment:
Q  54 tcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtcttcataaggacttagtgggccataccgtcattgggaaccatcaaa 153  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||| ||||||| ||| |||    
T  41369156 tcagcatgacatcattcttttggcaacgggatatttcaagaggtgtagaaccgtcatcataaagacttagtgggccataccgtcgttgggaatcat-aaa 41369254  T
Q  154 aaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttacttcatttc 242  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||    
T  41369255 aaacaactgttccacgcgatgattgacatctgtccagtatcaaaagctatatatgactatgagtcatacttttgctcttacttcatttc 41369343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 79474 - 79249
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtc 108  Q
    |||||||||||  ||||||||| |||| ||||||||||  | ||||||||||||||||||||||||||||| || ||||||||||||||    |||||||    
T  79474 gagaaacttgaaatttctgaaaatttt-cgataaagtgtgactcctcagcatgacatcattcttttgacaaaggaatatttcaaaaggttttaaaccgtc 79376  T
Q  109 ttcataaggacttagtgggccataccgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatg 208  Q
    ||||| || ||||||||||||||   ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  |||||| ||||| ||||    
T  79375 ttcatcagaacttagtgggccatgttgtcattgggaaccat-aaaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaggctatatatg 79277  T
Q  209 accctgagtcatacttttactcttactt 236  Q
    ||||| || |||||||||||||||||||    
T  79276 accctaagccatacttttactcttactt 79249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 51 - 242
Target Start/End: Complemental strand, 1734946 - 1734756
Alignment:
Q  51 tcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtcttcataaggacttagtgggccataccgtcattgggaaccatc 150  Q
    ||||||||||||||||||||||||| |||| ||||||||||| | ||| ||||||||| |||||| ||||||||||||||||| ||| ||||||| ||||    
T  1734946 tcctcagcatgacatcattcttttggcaacaggatatttcaagaagtgtagaaccgtcatcataaagacttagtgggccatactgtcgttgggaatcatc 1734847  T
Q  151 aaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttacttcatttc 242  Q
     |||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||| ||||    
T  1734846 -aaaaacaactattccacgcgatgattgacatctgtccaatatcaaaagctatatatgactctgagtcatacttttgctcttacttcgtttc 1734756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 22333983 - 22334073
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttact 229  Q
    ||||||||||| |||||| ||||  ||||| |||||  |||||||||||| | ||||||| ||||| ||| ||| || ||||||||||||||    
T  22333983 attgggaaccaccaaaaa-caaccgttccacgcgattgttgacatctgtcaaatatcaaaggctatatataaccttgggtcatacttttact 22334073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 24950719 - 24950578
Alignment:
Q  100 agaaccgtcttcataaggacttagtgggccataccgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaag 199  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||    
T  24950719 agaaccgtcttcctaaagacttagtgggccataccgtcattgggaaccatcaaaaa-caaccgttccatgcgatgattgacatctgtccaatatcaaaag 24950621  T
Q  200 ctatgtatgaccctgagtcatacttttactcttacttcatttc 242  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||    
T  24950620 ctatatatgaccctgagtcatatttttactcttacttcgtttc 24950578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 24954011 - 24953914
Alignment:
Q  4 tttaggagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcaga 102  Q
    ||||||||||| |||||||||||||||  || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24954011 tttaggagaaaattgacgtttctgaaaagttct-gatgaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcaga 24953914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 23190688 - 23190890
Alignment:
Q  34 tttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtcttcataaggacttagtgggccatac 133  Q
    |||||||||||||  | ||||| || |||||||| |||||||| || ||||||||||||||| |  | |||||||| ||| ||  |||||||||||||      
T  23190688 tttcgataaagtgtgactcctctgcgtgacatcactcttttgaaaaggggatatttcaaaagtttta-aaccgtctccatcagagcttagtgggccatgt 23190786  T
Q  134 c-gtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactctt 232  Q
      || ||||||||||| |||||||||||| ||||||||||||||||||||||||| |  |||||| ||||| ||||||| | || ||||||||||||||     
T  23190787 ttgttattgggaaccaacaaaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgaccttaagccatacttttactctc 23190886  T
Q  233 actt 236  Q
    ||||    
T  23190887 actt 23190890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 23611943 - 23612145
Alignment:
Q  34 tttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtcttcataaggacttagtgggccatac 133  Q
    |||||||||||||  | ||||| || |||||||| |||||||| || ||||||||||||||| |  | |||||||| ||| ||  |||||||||||||      
T  23611943 tttcgataaagtgtgactcctctgcgtgacatcactcttttgaaaaggggatatttcaaaagtttta-aaccgtctccatcagagcttagtgggccatgt 23612041  T
Q  134 c-gtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactctt 232  Q
      || ||||||||||| |||||||||||| ||||||||||||||||||||||||| |  |||||| ||||| ||||||| | || ||||||||||||||     
T  23612042 ttgttattgggaaccaacaaaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgaccttaagccatacttttactctc 23612141  T
Q  233 actt 236  Q
    ||||    
T  23612142 actt 23612145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 22648235 - 22648010
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtc 108  Q
    |||||||||||||||||||||| |||  ||||||||||  | |||||  | |||||||| |||||||| || |||| |||||||||| |  | || ||||    
T  22648235 gagaaacttgacgtttctgaaaattt--cgataaagtgtgactcctctacgtgacatcactcttttgaaaatgggacatttcaaaagtttta-aatcgtc 22648139  T
Q  109 ttcataaggacttagtgggccatacc-gtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtat 207  Q
    | ||| ||  |||||||||||||    || ||||||||| |||||||||||| | || |||||||||||||||||||||| |  |||||| ||||| |||    
T  22648138 tccattagagcttagtgggccatgtttgttattgggaacaatcaaaaaacaaatgttacatgcgatgattgacatctgtcaaacatcaaaggctatatat 22648039  T
Q  208 gaccctgagtcatacttttactcttactt 236  Q
    |||| | || |||||||||||||| ||||    
T  22648038 gaccttaagccatacttttactctcactt 22648010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 23615702 - 23615800
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |  |||||| ||||| ||||||| |  | |||||||||||||| ||||    
T  23615702 attgggaaccatcaaaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgaccttaggccatacttttactctcactt 23615800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 23615567 - 23615651
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaag 95  Q
    ||||||||||||||||||||||   |||||||||||||  | ||||| || ||||| || |||||||| || |||| ||||||||||    
T  23615567 gagaaacttgacgtttctgaaa--atttcgataaagtgtgactcctctgcgtgacaccactcttttgaaaaggggacatttcaaaag 23615651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 4207 - 3983
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtc 108  Q
    |||||||||||||||||||||| |||  |||| ||| |  | ||||||||||||||||| |||||| |||| |||||| ||||||||    | |||||||    
T  4207 gagaaacttgacgtttctgaaaattt--cgatgaagcgtgactcctcagcatgacatcactcttttaacaaagggataattcaaaagtctta-aaccgtc 4111  T
Q  109 ttcataaggacttagtgggccatacc-gtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtat 207  Q
    ||||| ||  |||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||    
T  4110 ttcatcagagcttagtgggccatgtttgtcattgggaaccatcaaaaaacaactgttccatgcgatgattgacatctgtccaatatcaaaggctatatat 4011  T
Q  208 gaccctgagtcatacttttactcttactt 236  Q
     ||| |  | ||||| |||||||||||||    
T  4010 aaccttaggccatac-tttactcttactt 3983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 23496106 - 23496009
Alignment:
Q  139 ttgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |  |||||| ||||| ||||||| | || |||||||||||||| ||||    
T  23496106 ttgggaaccatcaaaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgaccttaagccatacttttactctcactt 23496009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 19025959 - 19026057
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||| |  |||||| ||||| ||||||| || |||||||||||||||| ||||    
T  19025959 attgggaaccatcaaaaaacaactgttccatgcgatcgttgacatctgtcaaacatcaaaggctatatatgaccttgggtcatacttttactctcactt 19026057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 27343 - 27436
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactctt 232  Q
    |||||||||||| ||||||||||| | ||||||||| ||||||||||||| | ||||||| ||||| ||||||| ||||||||||||||||||||    
T  27343 attgggaaccat-aaaaaacaactgtcccatgcgatcattgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactctt 27436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 44829 - 44926
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    |||||||||||| ||||||||||  | ||||||||| | ||||||||||| | ||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  44829 attgggaaccat-aaaaaacaaccgtcccatgcgatcaatgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactcttactt 44926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 13277798 - 13277897
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctga-gtcatacttttactcttactt 236  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||| |  |||||| ||||| ||||||| | | |||||||||||||||| ||||    
T  13277798 attgggaaccatcaaaaaacaactgttccacgcgatggttgacatctgtcaaacatcaaaggctatatatgacctttaggtcatacttttactctcactt 13277897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 14557478 - 14557557
Alignment:
Q  152 aaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactct 231  Q
    |||||||||| |||||||||||||||||||||||||  | |||||| ||||| ||||||| |  |||||| |||||||||    
T  14557478 aaaaacaactgttccatgcgatgattgacatctgtcaggcatcaaaggctatatatgaccttaggtcatatttttactct 14557557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 14557327 - 14557392
Alignment:
Q  7 aggagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattctttt 74  Q
    ||||||||||||| |||| ||||  |||||||||||| ||  | ||||||||||||||||||||||||    
T  14557327 aggagaaacttgatgtttttgaa--tttttcgataaaatgtgactcctcagcatgacatcattctttt 14557392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 13277658 - 13277693
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagt 45  Q
    |||||||||||||||||||||| ||||||||||||||    
T  13277658 gagaaacttgacgtttctgaaa-tttttcgataaagt 13277693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1701 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1701
Description:

Target: scaffold1701; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 1457 - 1403
Alignment:
Q  188 cagtatcaaaagctatgtatgaccctgagtcatacttttactcttacttcatttc 242  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  1457 cagtatcaaaagctatatatgaccctgagtcatacttttactcttacttcgtttc 1403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 40889 - 40791
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||| |  |||||| ||||| |||||||    |||||||||||||||| ||||    
T  40889 attgggaaccatcaaaaaacaactgttccacgcgatggttgacatctgtcaaacatcaaaggctatatatgacctcaggtcatacttttactctcactt 40791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 41029 - 40965
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattctttt 74  Q
    |||||||||||||||||||||||||||| ||||||||   | ||||| || |||||||| ||||||    
T  41029 gagaaacttgacgtttctgaaatttttt-gataaagtatgactcctccgcgtgacatcactctttt 40965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 118869 - 118961
Alignment:
Q  136 tcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttact 229  Q
    |||||||||||||| ||||||||||  ||||||| ||| | ||||||||||| | ||||||| ||||| ||||||| |||||||||||||||||    
T  118869 tcattgggaaccat-aaaaaacaaccgttccatgagattaatgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttact 118961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 115915 - 116011
Alignment:
Q  139 ttgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    ||||||||||| ||||||||||  ||||||||||| ||||||||||||| | ||||||| ||||| ||| ||| || |||||||||||||||| ||||    
T  115915 ttgggaaccat-aaaaaacaaccgttccatgcgatcattgacatctgtcaaatatcaaaggctatatataaccttgggtcatacttttactctcactt 116011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 21529864 - 21529767
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttactcttactt 236  Q
    |||||||||||||||||| ||||  |||||||||||  |||||||||||| | ||||||| ||||| ||||||| || ||| |||||||||||| ||||    
T  21529864 attgggaaccatcaaaaa-caaccgttccatgcgatcgttgacatctgtcaaatatcaaaggctatatatgaccttgggtcgtacttttactctcactt 21529767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 15652 - 15715
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattctttt 74  Q
    |||||||||||||||||||||  |||||||||||| ||  | ||||||||||||||||||||||||    
T  15652 gagaaacttgacgtttctgaa--tttttcgataaaatgtgactcctcagcatgacatcattctttt 15715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 43888 - 43712
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcagaaccgtc 108  Q
    |||||||||||||||||| ||| |||  ||||||||||  | || |  || |||||||| ||||||||||| |||||||||||||| ||   ||||||||    
T  43888 gagaaacttgacgtttctaaaaattt--cgataaagtgtgactcttatgcgtgacatcactcttttgacaaggggatatttcaaaa-gttttgaaccgtc 43792  T
Q  109 ttcataaggacttagtgggccat-accgtcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtcc 188  Q
    | ||| ||  |||||||||||||    ||  |||||||| ||| |||||||||| ||||||||||||||| ||| ||||||    
T  43791 tccattagcgcttagtgggccatgtttgttcttgggaactatc-aaaaacaactgttccatgcgatgatttacacctgtcc 43712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 84594 - 84504
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttact 229  Q
    |||||||||||||||||| ||||  |||||||||||  |||||||||||| | ||||||| ||||| ||| ||| ||  |||||||||||||    
T  84594 attgggaaccatcaaaaa-caaccgttccatgcgatagttgacatctgtcaaatatcaaaggctatatataaccttggatcatacttttact 84504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 24644 - 24555
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttac 228  Q
    |||||||||||||||||| ||| | |||||||||||  ||||||||| || | ||||||| ||||| ||| ||| || |||||||||||||    
T  24644 attgggaaccatcaaaaa-caattgttccatgcgattgttgacatctctcaaatatcaaaggctatatataaccttgggtcatacttttac 24555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 58092 - 57955
Alignment:
Q  102 aaccgtcttcataaggacttagtgggccatacc-gtcattgggaaccatcaaaaaacaa-cttttccatgcgatgattgacatctgtccagtatcaaaag 199  Q
    |||||||| ||| ||  |||||||||||||  | || |||||||||||| ||||||||| || ||||| |||||| |||||||||||| |  |||||| |    
T  58092 aaccgtctccatcagagcttagtgggccatgtctgttattgggaaccataaaaaaacaaactgttccacgcgatggttgacatctgtcaaacatcaaagg 57993  T
Q  200 ctatgtatgaccctga-gtcatacttttactcttactt 236  Q
    |||| ||||||| | | |||| ||||||||||| ||||    
T  57992 ctatatatgacctttaggtcacacttttactctcactt 57955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 58194 - 58159
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagt 45  Q
    ||||||||||||||||||||||| |||||||||||||    
T  58194 gagaaacttgacgtttctgaaat-ttttcgataaagt 58159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 6359 - 6450
Alignment:
Q  138 attgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttact 229  Q
    ||||||||| |||||||||||||| |||||  ||||| ||||||||||||  | |||||| |||||  |||||| |  | ||||||||||||    
T  6359 attgggaactatcaaaaaacaactgttccacacgatggttgacatctgtcaggcatcaaaggctatacatgaccttaggccatacttttact 6450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 6224 - 6288
Alignment:
Q  9 gagaaacttgacgtttctgaaattttttcgataaagtgcaattcctcagcatgacatcattctttt 74  Q
    ||||||||||||||||||| ||| ||||||||||| |   | |||||||| |||||||||||||||    
T  6224 gagaaacttgacgtttctg-aatattttcgataaaatatgactcctcagcgtgacatcattctttt 6288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 29902 - 29994
Alignment:
Q  136 tcattgggaaccatcaaaaaacaacttttccatgcgatgattgacatctgtccagtatcaaaagctatgtatgaccctgagtcatacttttact 229  Q
    ||||||||||||||| |||||||||  ||||| |||||   ||||||||| | | ||||||||| ||| ||| ||| ||||||||| |||||||    
T  29902 tcattgggaaccatc-aaaaacaaccgttccacgcgattgctgacatctggcaaatatcaaaagttatatataaccttgagtcatatttttact 29994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University