View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_high_3 (Length: 578)
Name: NF2996_high_3
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 3 - 561
Target Start/End: Original strand, 47788031 - 47788605
Alignment:
| Q |
3 |
aacacaacacagcaccgtcatcttctctccgactcaaa-gagttttgagttttctctcaaaatgatagacccctacggtttcgggtggatcacatgcacc |
101 |
Q |
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| T |
47788031 |
aacacaacacagcaccgtcatcttctctccgactcaaaagagttttgagttttctctcaaaatgatagacccctacggtttcgggtggatcacatgcacc |
47788130 |
T |
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| Q |
102 |
ctcatcaccctcgctgcactctacaatttccttttctctcgtaaaaaccattcagattcaacaaccaccgagaacattacaaccgctaccggagaatgca |
201 |
Q |
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| T |
47788131 |
ctcatcacccttgctgcactctacaatttccttttctctcgtaaaaaccattcagattcaacaaccaccgagaacattacaaccgctaccggagaatgca |
47788230 |
T |
|
| Q |
202 |
gatcttttaatcccaacggcgatgttgatatcatcattgtcggtgctggtgtcgccggctccgctctcgcttacactcgcggccaggtttttcattccca |
301 |
Q |
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| T |
47788231 |
gatcttttaatcccaacggcgatgttgatatcatcattgtcggtgctggtgtcgccggctccgctctcgcttacactctcggcaaggtttttcattccca |
47788330 |
T |
|
| Q |
302 |
ttcctatttcttcgtaatttcagtcattgatattacgttattttgttgaatattattaggaatatatctggttttattgaataatcgataaccatgtgtt |
401 |
Q |
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| T |
47788331 |
ttcctatttcttcgtaatttcagtcattgatattacgttattttgttgaatattattaggaatatatttggttttattgaataatcgataaccatgtgtt |
47788430 |
T |
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| Q |
402 |
actactgtgaatgcccgtatctatggttaaatctgctgttgtggg--------tcagggtttaggtttgttgtctgtacaggaaactttttctttacc-- |
491 |
Q |
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| T |
47788431 |
actactgtgaatgcccgtatctatggttaaatctgctgttgtgggtcagggactcagggtttaggtttgttgtatgtacaggaaactttttctttaccaa |
47788530 |
T |
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| Q |
492 |
-----gattatgaatggaatggggacagatattgacatatccatgttagttataccatgcatccggtgtacttag |
561 |
Q |
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| T |
47788531 |
ttatgaattatgaatggaatggggacagatattgacatatccatgttagttatactatgcatccggtgtgcttag |
47788605 |
T |
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