View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2996_high_6 (Length: 495)
Name: NF2996_high_6
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Original strand, 2720911 - 2721379
Alignment:
| Q |
10 |
aagaatatcgcagtgtagacatttcaaaagttgaaattgtaaacacaaagagtcagctaaacagcttgatagatatacttaaaaatcagaaaatttttgg |
109 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2720911 |
aagaatatcgcaatgtaaacatttcaaaagttgaaattgtaaacacaaagaatcagctaaacagcttgatagatatacttaaaaatcagaaaatttttgg |
2721010 |
T |
|
| Q |
110 |
gctagacttagaacatagtaagcatagatcatatcttgggaaagtaagtttt--gcaaatttcatttttgaatagggatttaattgtagacacattaaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2721011 |
gctagacttagaacatagtaagcatagatcatatcttaggatagtaagtcttatgcaaatttcatttttgaatagggatttaattgtagacacattaaag |
2721110 |
T |
|
| Q |
208 |
ctacatgatagcatttatcaaatgaaaatcatttttaaagatgttaatatctgtaaagtaattcatggaggggccaatgatatcctttgactccaaaagt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |
|
|
| T |
2721111 |
ctacatgatagcatttatcaaatgaaaatcatttttgaagatgttaatatctgtaaagtaattcatggagggaccaatgatatcctttggctccgaaagt |
2721210 |
T |
|
| Q |
308 |
attcctagactatttgacnnnnnnnnnnnnttttacattttcaatctatcataagcatcatatcattaaaatgtttgatatttatctcaactacttttga |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |||||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
2721211 |
attcctagactatttgacaaaaataaagaattttacattttcaatcaatcataaacatcatttcataaaaatgtttgatatttatcccaactacttttga |
2721310 |
T |
|
| Q |
408 |
aatcacacatgtagataggagtaaaatgttgacaatattaaactttttacactaataatatatcaaaca |
476 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2721311 |
aatcacacatatagataggagtaaaatgttgacaatattaaactttttacactaataatatatcaaaca |
2721379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 4614305 - 4614381
Alignment:
| Q |
228 |
aatgaaaatcatttttaaagatgttaatatctgtaaagtaattcatggaggggccaatgatatcctttgactccaaa |
304 |
Q |
| |
|
||||||| |||||||| ||||||| || || || || ||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4614305 |
aatgaaattcatttttgaagatgtgaacatatgcaaggtaatccatggtggggccaatgatatcctttggctccaaa |
4614381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University