View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_high_9 (Length: 367)
Name: NF2996_high_9
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 52385986 - 52385644
Alignment:
| Q |
20 |
cctgtcaccttacatgtgccacatgccaacataaaatgaaccaaaattttaattcctgacttgaacaatctaaccacaagcaagaattatcaaatgggtt |
119 |
Q |
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| T |
52385986 |
cctgtcaccttacatgtgccacatgccaacataaaatgaaccaaaattttaattcctgacttgaacaatctaaccacaagcaagaattatcaaatgggtt |
52385887 |
T |
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| Q |
120 |
gacccttctaaactgaaaggtgtacttaaaaaagtaaaatacaaataataactgttaaatgaaaactcagatcagattacagctaaataaccttcatgca |
219 |
Q |
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| T |
52385886 |
gacccttctaaactgaaaggtgtacttaaaaaagtaaaatacaaataataactgttaaatgaaaactcagatcagattacagctaaataaccttcatgca |
52385787 |
T |
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| Q |
220 |
tgtaaatatatttatcacaatctcaattgttattttttccatcaacagttataactccgcactttacctttttgaaatacaccttcaacttagagtaacc |
319 |
Q |
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| T |
52385786 |
tgtaaatatatttatcacaatctcaattgttattttttccatcaacagttataactccgcactttacctttttgaaatacaccttcaacttagagtaacc |
52385687 |
T |
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| Q |
320 |
aaatttagtgatcagagtccaacctcagggcatctgtgctgct |
362 |
Q |
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| T |
52385686 |
aaatttagtgatcagagtccaacctcagggcatgtgtgttgct |
52385644 |
T |
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