View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_low_11 (Length: 312)
Name: NF2996_low_11
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 12102743 - 12102794
Alignment:
| Q |
251 |
gtacaaggacctcaagagtgatgctccggtcaggtaatgagccgactctctg |
302 |
Q |
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| T |
12102743 |
gtacaaggacctcaagagtgatgctccggtcaggtaatgagccgactctctg |
12102794 |
T |
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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 12102377 - 12102417
Alignment:
| Q |
27 |
cttttgcgccactatagtgactagctctagtgattttctgc |
67 |
Q |
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| T |
12102377 |
cttttgcgccactatagtgactagctctagtgattttctgc |
12102417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 28029103 - 28029057
Alignment:
| Q |
79 |
ttactcgcctctagaccgaagaggtaccagaatgaaccaataacatg |
125 |
Q |
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| T |
28029103 |
ttactcacctctagaccaaagaggtaccagcatgaaccaacaacatg |
28029057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 12102683 - 12102724
Alignment:
| Q |
152 |
attattatgtgatttgcccaaaatgactcgaaagtgagcccg |
193 |
Q |
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| T |
12102683 |
attaatatgtgatttgcccaaaataactcaaaagtgagcccg |
12102724 |
T |
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