View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2996_low_14 (Length: 249)

Name: NF2996_low_14
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2996_low_14
NF2996_low_14
[»] chr1 (34 HSPs)
chr1 (1-223)||(48415486-48415708)
chr1 (181-230)||(34741916-34741965)
chr1 (178-219)||(47989589-47989630)
chr1 (179-218)||(35702540-35702579)
chr1 (180-218)||(6574059-6574097)
chr1 (177-230)||(10577671-10577725)
chr1 (181-230)||(32461393-32461443)
chr1 (179-216)||(22515825-22515862)
chr1 (181-218)||(36878548-36878585)
chr1 (181-218)||(37598913-37598950)
chr1 (172-229)||(48450541-48450598)
chr1 (180-235)||(2218292-2218348)
chr1 (177-217)||(9630557-9630597)
chr1 (182-229)||(10572535-10572583)
chr1 (179-219)||(16812637-16812677)
chr1 (181-217)||(22947813-22947849)
chr1 (183-219)||(42359391-42359427)
chr1 (181-216)||(1704935-1704970)
chr1 (179-218)||(18556383-18556422)
chr1 (181-216)||(21365992-21366027)
chr1 (181-219)||(9828136-9828174)
chr1 (176-218)||(15765840-15765882)
chr1 (183-217)||(16297223-16297257)
chr1 (181-219)||(22881567-22881605)
chr1 (181-230)||(25934696-25934746)
chr1 (181-219)||(27965940-27965978)
chr1 (181-219)||(40917841-40917879)
chr1 (186-219)||(351023-351056)
chr1 (181-214)||(24334664-24334697)
chr1 (181-218)||(34712323-34712360)
chr1 (183-219)||(398735-398771)
chr1 (183-219)||(1486646-1486682)
chr1 (181-217)||(7918154-7918190)
chr1 (181-234)||(35919226-35919281)
[»] chr5 (26 HSPs)
chr5 (178-228)||(17123119-17123169)
chr5 (181-229)||(39695951-39695999)
chr5 (180-219)||(35017124-35017163)
chr5 (181-219)||(14873603-14873641)
chr5 (181-230)||(21576685-21576735)
chr5 (181-217)||(10298633-10298669)
chr5 (183-219)||(21190998-21191034)
chr5 (181-217)||(22423764-22423800)
chr5 (180-216)||(39698636-39698672)
chr5 (178-217)||(24906249-24906288)
chr5 (181-216)||(36838615-36838650)
chr5 (183-229)||(41995534-41995581)
chr5 (181-219)||(19820328-19820366)
chr5 (181-219)||(21522842-21522880)
chr5 (181-219)||(21533408-21533446)
chr5 (177-230)||(30098406-30098460)
chr5 (184-218)||(39268541-39268575)
chr5 (183-217)||(43001888-43001922)
chr5 (181-219)||(43564962-43565000)
chr5 (185-218)||(4105341-4105374)
chr5 (182-230)||(6401578-6401627)
chr5 (182-218)||(3966596-3966632)
chr5 (181-228)||(21194063-21194111)
chr5 (179-230)||(30098976-30099028)
chr5 (193-228)||(39342513-39342549)
chr5 (190-230)||(43554596-43554636)
[»] chr3 (27 HSPs)
chr3 (182-230)||(15864902-15864950)
chr3 (173-226)||(4990904-4990958)
chr3 (179-219)||(34185050-34185090)
chr3 (181-230)||(13845465-13845515)
chr3 (181-219)||(20503546-20503584)
chr3 (182-219)||(15999951-15999988)
chr3 (181-232)||(11610576-11610628)
chr3 (183-230)||(28918072-28918120)
chr3 (182-217)||(1389921-1389956)
chr3 (174-217)||(5407192-5407235)
chr3 (181-216)||(8842413-8842448)
chr3 (181-216)||(55401159-55401194)
chr3 (181-219)||(2408590-2408628)
chr3 (182-216)||(8789489-8789523)
chr3 (181-219)||(14979230-14979268)
chr3 (181-219)||(27505332-27505370)
chr3 (177-230)||(35223007-35223061)
chr3 (181-219)||(40052393-40052431)
chr3 (181-219)||(40993275-40993313)
chr3 (181-230)||(41961579-41961629)
chr3 (174-219)||(14209205-14209250)
chr3 (182-219)||(34910398-34910435)
chr3 (180-209)||(51206292-51206321)
chr3 (183-219)||(4987222-4987258)
chr3 (181-217)||(21861658-21861694)
chr3 (183-219)||(29508531-29508567)
chr3 (182-218)||(37077452-37077488)
[»] chr8 (25 HSPs)
chr8 (182-228)||(13009423-13009469)
chr8 (181-230)||(39820498-39820547)
chr8 (176-230)||(3951471-3951526)
chr8 (180-230)||(34450960-34451011)
chr8 (181-219)||(13436910-13436948)
chr8 (181-222)||(9383044-9383085)
chr8 (175-219)||(16641903-16641947)
chr8 (181-217)||(34127172-34127208)
chr8 (181-216)||(13397635-13397670)
chr8 (180-219)||(17751737-17751776)
chr8 (180-219)||(17760724-17760763)
chr8 (182-217)||(29447040-29447075)
chr8 (181-216)||(31514938-31514973)
chr8 (181-215)||(4673354-4673388)
chr8 (181-219)||(15816058-15816096)
chr8 (181-219)||(22652068-22652106)
chr8 (181-219)||(25566911-25566949)
chr8 (181-219)||(29510233-29510271)
chr8 (178-215)||(11803355-11803392)
chr8 (186-234)||(31109463-31109512)
chr8 (178-219)||(37283752-37283793)
chr8 (181-229)||(4948706-4948754)
chr8 (183-219)||(16987994-16988030)
chr8 (181-217)||(36450694-36450730)
chr8 (182-218)||(43737752-43737788)
[»] chr7 (25 HSPs)
chr7 (181-219)||(9778586-9778624)
chr7 (184-219)||(8842282-8842317)
chr7 (181-219)||(5409771-5409809)
chr7 (181-223)||(29812598-29812640)
chr7 (178-219)||(6490797-6490838)
chr7 (181-230)||(23751969-23752018)
chr7 (181-217)||(5307339-5307375)
chr7 (181-217)||(7438800-7438836)
chr7 (181-217)||(28155637-28155673)
chr7 (181-217)||(29763129-29763165)
chr7 (181-217)||(35862034-35862070)
chr7 (179-218)||(32093952-32093991)
chr7 (176-219)||(40287297-40287340)
chr7 (181-219)||(598289-598327)
chr7 (182-228)||(18035806-18035852)
chr7 (181-219)||(24339734-24339772)
chr7 (181-219)||(28973881-28973919)
chr7 (181-215)||(30813882-30813916)
chr7 (181-219)||(43027404-43027442)
chr7 (181-218)||(3991395-3991432)
chr7 (179-212)||(19213881-19213914)
chr7 (182-219)||(32287404-32287441)
chr7 (181-217)||(1433542-1433578)
chr7 (188-235)||(18215144-18215192)
chr7 (181-217)||(21880235-21880271)
[»] chr6 (22 HSPs)
chr6 (182-219)||(31385011-31385048)
chr6 (181-217)||(10649371-10649407)
chr6 (181-228)||(4878014-4878061)
chr6 (181-230)||(17327590-17327640)
chr6 (180-218)||(34446653-34446691)
chr6 (181-235)||(8805524-8805580)
chr6 (181-218)||(18367929-18367966)
chr6 (184-235)||(9025448-9025500)
chr6 (180-223)||(6389809-6389852)
chr6 (181-235)||(9027231-9027286)
chr6 (184-219)||(32978842-32978877)
chr6 (181-215)||(7723199-7723233)
chr6 (184-218)||(7996325-7996359)
chr6 (184-218)||(8022442-8022476)
chr6 (181-230)||(8365448-8365498)
chr6 (182-216)||(17841530-17841564)
chr6 (181-219)||(34595215-34595253)
chr6 (181-218)||(10339054-10339091)
chr6 (179-216)||(13360311-13360348)
chr6 (182-219)||(31959231-31959268)
chr6 (181-217)||(426478-426514)
chr6 (181-217)||(5732474-5732510)
[»] chr4 (36 HSPs)
chr4 (180-219)||(23292925-23292964)
chr4 (181-219)||(5775304-5775342)
chr4 (181-218)||(715545-715582)
chr4 (181-218)||(752871-752908)
chr4 (182-223)||(4383443-4383484)
chr4 (182-219)||(30982808-30982845)
chr4 (181-216)||(3064868-3064903)
chr4 (180-230)||(5414100-5414151)
chr4 (183-230)||(7424727-7424774)
chr4 (181-220)||(18966589-18966628)
chr4 (181-216)||(20633555-20633590)
chr4 (179-230)||(23386228-23386279)
chr4 (184-230)||(28084593-28084640)
chr4 (179-218)||(28964186-28964225)
chr4 (181-228)||(34515811-34515858)
chr4 (181-227)||(36635402-36635449)
chr4 (181-219)||(11596297-11596335)
chr4 (177-219)||(12884343-12884385)
chr4 (181-219)||(12895214-12895252)
chr4 (183-217)||(22440559-22440593)
chr4 (181-219)||(28470446-28470484)
chr4 (181-219)||(30299010-30299048)
chr4 (181-219)||(30327878-30327916)
chr4 (181-219)||(40784034-40784072)
chr4 (181-219)||(53381530-53381568)
chr4 (182-219)||(848043-848080)
chr4 (181-214)||(19500787-19500820)
chr4 (181-218)||(29205550-29205587)
chr4 (181-217)||(2625959-2625995)
chr4 (181-217)||(11931374-11931410)
chr4 (182-229)||(17425348-17425396)
chr4 (181-217)||(17876249-17876285)
chr4 (181-217)||(18513175-18513211)
chr4 (181-217)||(18844423-18844459)
chr4 (181-217)||(24613630-24613666)
chr4 (181-217)||(42640607-42640643)
[»] chr2 (22 HSPs)
chr2 (182-217)||(18255945-18255980)
chr2 (182-229)||(23354582-23354629)
chr2 (183-230)||(23354926-23354973)
chr2 (181-230)||(24009364-24009414)
chr2 (181-230)||(26769591-26769641)
chr2 (181-219)||(37419835-37419873)
chr2 (181-218)||(30717459-30717496)
chr2 (183-219)||(2438661-2438697)
chr2 (179-219)||(18840951-18840991)
chr2 (183-219)||(42832234-42832270)
chr2 (179-229)||(18631349-18631400)
chr2 (180-219)||(38117098-38117137)
chr2 (181-219)||(11223793-11223831)
chr2 (181-219)||(34221463-34221501)
chr2 (181-230)||(42511322-42511372)
chr2 (181-218)||(34993922-34993959)
chr2 (182-218)||(3444827-3444863)
chr2 (181-217)||(10535685-10535721)
chr2 (181-217)||(19536361-19536397)
chr2 (183-219)||(19942346-19942382)
chr2 (181-217)||(21616828-21616864)
chr2 (177-217)||(28596552-28596592)
[»] scaffold0380 (1 HSPs)
scaffold0380 (181-230)||(8670-8720)
[»] scaffold0027 (1 HSPs)
scaffold0027 (178-216)||(46741-46779)
[»] scaffold0793 (1 HSPs)
scaffold0793 (181-218)||(4821-4858)
[»] scaffold0475 (1 HSPs)
scaffold0475 (181-218)||(3390-3427)
[»] scaffold0057 (1 HSPs)
scaffold0057 (181-229)||(24107-24155)
[»] scaffold0004 (1 HSPs)
scaffold0004 (182-217)||(92905-92940)
[»] scaffold0306 (1 HSPs)
scaffold0306 (183-217)||(13489-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (183-217)||(21804-21838)
[»] scaffold0003 (1 HSPs)
scaffold0003 (181-219)||(241686-241724)
[»] scaffold0652 (1 HSPs)
scaffold0652 (182-219)||(403-440)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48415486 - 48415708
Alignment:
Q  1 atgtcattgtttgtgtgtcttcaatatatagctatagctattaactaccactttcattaacttctacatcagtaagccatttttggtttatgggtgggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48415486 atgtcattgtttgtgtgtcttcaatatatagctatagctattaactaccactttcattaacttctacatcagtaagccatttttggtttatgggtgggtt 48415585  T
Q  101 ggtgctaataaacaatgcttgacattaaaagcattatgcctcgactcaacatagaaacataaacaaaacaaagtcctaaactatgaagcacggacactcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  48415586 ggtgctaataaacaatgcttgacattaaaagcattatgcctcgactcaacatagaaacataaacaaaacaaagtcctgaaatatgaagcacggacactcc 48415685  T
Q  201 ttggattaggcgtgtcccgtgtc 223  Q
    ||||||||||||||||| |||||    
T  48415686 ttggattaggcgtgtcctgtgtc 48415708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 34741965 - 34741916
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtctgacacg 230  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||    
T  34741965 ctatgaagcacggacactcttcggattaggcgtgtcccgtgtcggacacg 34741916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 47989630 - 47989589
Alignment:
Q  178 aaactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  47989630 aaactatgaagcacggacactcctcggattaggcgtgtcccg 47989589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 35702540 - 35702579
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  35702540 aactatgaagcacggacactcctcggattaggcgtgtccc 35702579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 6574097 - 6574059
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6574097 actatgaagcacggtcactccttggattaggcgtgtccc 6574059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 10577671 - 10577725
Alignment:
Q  177 taaactatgaagcacggacactccttggattaggcgtgt-cccgtgtctgacacg 230  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  10577671 taaagtatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacg 10577725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 32461393 - 32461443
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacg 32461443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 22515825 - 22515862
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  22515825 aactatgaagcacggacactcctcggattaggcgtgtc 22515862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 36878585 - 36878548
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  36878585 ctatgaagcacggacactcctgggattaggcgtgtccc 36878548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 37598950 - 37598913
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtccc 37598913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 48450541 - 48450598
Alignment:
Q  172 agtcctaaactatgaagcacggacactccttggattaggcgtgtcccgtgtctgacac 229  Q
    |||||| | ||||||||||||||||||||| ||||||| ||||||| ||||| |||||    
T  48450541 agtccttagctatgaagcacggacactcctcggattagacgtgtcctgtgtccgacac 48450598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 2218348 - 2218292
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtcc-cgtgtctgacacgacacc 235  Q
    ||||||||||||||||||||||  ||||||||||||||  ||||| |||||||||||    
T  2218348 actatgaagcacggacactcctcagattaggcgtgtcctagtgtcggacacgacacc 2218292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 9630557 - 9630597
Alignment:
Q  177 taaactatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  9630557 taaactatgaagcacgaacactcctcggattaggcgtgtcc 9630597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 10572535 - 10572583
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcc-cgtgtctgacac 229  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||||||    
T  10572535 tatgaagcacggacactccttgaattaggcgtgtccacgtgcctgacac 10572583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 16812677 - 16812637
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  16812677 aactatgaagcacggacactcctcagattaggcgtgtcccg 16812637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 22947849 - 22947813
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| |||||||||||||||    
T  22947849 ctatgaagcacggacactcctcggattaggcgtgtcc 22947813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 42359391 - 42359427
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccg 42359427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 1704935 - 1704970
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    |||||||||| |||||||||||||||||||||||||    
T  1704935 ctatgaagcatggacactccttggattaggcgtgtc 1704970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 18556383 - 18556422
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  18556383 aactatgaagcacggacacttctcggattaggcgtgtccc 18556422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 21365992 - 21366027
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21365992 ctatgaagcacggacactcctcggattaggcgtgtc 21366027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 9828174 - 9828136
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccg 9828136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 15765882 - 15765840
Alignment:
Q  176 ctaaactatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||| ||||||||||||||||||| | ||||||||||||||||    
T  15765882 ctaacctatgaagcacggacactcttcggattaggcgtgtccc 15765840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 16297223 - 16297257
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||| |||||||||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcc 16297257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 22881567 - 22881605
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  22881567 ctatgaagcacggacactcctcggattagacgtgtcccg 22881605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 25934746 - 25934696
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgt-cccgtgtctgacacg 230  Q
    |||||||||||||||||||||||||| |||||| | |||||||| ||||||    
T  25934746 ctatgaagcacggacactccttggataaggcgtatccccgtgtcagacacg 25934696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 27965940 - 27965978
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  27965940 ctatgaagcatggacactcctcggattaggcgtgtcccg 27965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 40917879 - 40917841
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccg 40917841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 351023 - 351056
Alignment:
Q  186 aagcacggacactccttggattaggcgtgtcccg 219  Q
    |||| |||||||||||||||||||||||||||||    
T  351023 aagctcggacactccttggattaggcgtgtcccg 351056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 24334664 - 24334697
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtg 214  Q
    |||||||||||||||||| |||||||||||||||    
T  24334664 ctatgaagcacggacactacttggattaggcgtg 24334697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 34712323 - 34712360
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  34712323 ctatgaagcacggacactccttgaattagacgtgtccc 34712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 398735 - 398771
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  398735 atgaagcacggacacttcttagattaggcgtgtcccg 398771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 1486646 - 1486682
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccg 1486682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 7918154 - 7918190
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  7918154 ctatgaagcacggacactcctcggattaggtgtgtcc 7918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 35919226 - 35919281
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc--cgtgtctgacacgacac 234  Q
    |||||||||||||||| ||||  ||||||||||||||  |||||| ||||||||||    
T  35919226 ctatgaagcacggacagtcctccgattaggcgtgtcccgcgtgtccgacacgacac 35919281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 17123169 - 17123119
Alignment:
Q  178 aaactatgaagcacggacactccttggattaggcgtgtcccgtgtctgaca 228  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  17123169 aaactatgaagcacggacactcctcggattaggcgtgtcccgtgtcggaca 17123119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 39695951 - 39695999
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtctgacac 229  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| |||||    
T  39695951 ctatgaagcaccgacactcctaggattaggcgtgtcccgtgtcggacac 39695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 35017163 - 35017124
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  35017163 actatgaagcacggacactcctcggattaggcgtgtcccg 35017124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 14873641 - 14873603
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcccg 14873603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 21576685 - 21576735
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacg 21576735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 10298669 - 10298633
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10298669 ctatgaagcacggacactcctcggattaggcgtgtcc 10298633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 21190998 - 21191034
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccg 21191034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 22423764 - 22423800
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| |||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtcc 22423800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 39698672 - 39698636
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtc 216  Q
    |||||||||||||||||||||| ||||||||||||||    
T  39698672 actatgaagcacggacactcctcggattaggcgtgtc 39698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 24906249 - 24906288
Alignment:
Q  178 aaactatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  24906249 aaactatgaagcacggacactcctcgaattaggcgtgtcc 24906288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 36838650 - 36838615
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36838650 ctatgaagcacagacactccttggattaggcgtgtc 36838615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 41995581 - 41995534
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcc-cgtgtctgacac 229  Q
    ||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  41995581 atgaagcacggacactcctaggattaggcgtgtcctcgtgtccgacac 41995534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 19820328 - 19820366
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccg 19820366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 21522880 - 21522842
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  21522880 ctatgatgcacggacactctttggattaggcgtgtcccg 21522842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 21533446 - 21533408
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  21533446 ctatgatgcacggacactctttggattaggcgtgtcccg 21533408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 30098460 - 30098406
Alignment:
Q  177 taaactatgaagcacggacactccttggattaggcgtgtcc-cgtgtctgacacg 230  Q
    |||||||||||||||||||| |||| |||||||| ||||||  ||||||||||||    
T  30098460 taaactatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacg 30098406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 39268541 - 39268575
Alignment:
Q  184 tgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||||||||| ||||||||||||||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtccc 39268575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 43001922 - 43001888
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||| |||||||||||||||    
T  43001922 atgaagcacggacactcctcggattaggcgtgtcc 43001888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 43565000 - 43564962
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||| || |||||||||||||||||    
T  43565000 ctatgaagcacggacacttctcggattaggcgtgtcccg 43564962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 4105374 - 4105341
Alignment:
Q  185 gaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||| ||||||||||||||||    
T  4105374 gaagcacggacactcctcggattaggcgtgtccc 4105341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 6401627 - 6401578
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgt-cccgtgtctgacacg 230  Q
    ||||||||||||||||||||||||| |||||| | |||||||| ||||||    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacg 6401578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 3966632 - 3966596
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  3966632 tatgaagcacggacactcctcggattagacgtgtccc 3966596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 21194063 - 21194111
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgaca 228  Q
    |||| |||||||||||||||| |||||||||||| ||| ||||||||||    
T  21194063 ctataaagcacggacactcctcggattaggcgtgccccggtgtctgaca 21194111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 30098976 - 30099028
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgt-cccgtgtctgacacg 230  Q
    ||||| |||||||| ||||||||||||| |||||||| |||||||| ||||||    
T  30098976 aactacgaagcacgaacactccttggataaggcgtgtccccgtgtcagacacg 30099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 39342549 - 39342513
Alignment:
Q  193 gacactccttggattaggcgtgtccc-gtgtctgaca 228  Q
    |||||||||||||||||||||||||| ||||||||||    
T  39342549 gacactccttggattaggcgtgtcccggtgtctgaca 39342513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 43554636 - 43554596
Alignment:
Q  190 acggacactccttggattaggcgtgtcccgtgtctgacacg 230  Q
    ||||||||| || ||||||||||||||||||||| ||||||    
T  43554636 acggacacttctcggattaggcgtgtcccgtgtcggacacg 43554596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 15864950 - 15864902
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccgtgtctgacacg 230  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  15864950 tatgaagcacggacactctttggattaggcgtgtcccgtgtcagacacg 15864902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 4990904 - 4990958
Alignment:
Q  173 gtcctaaactatgaagcacggacactccttggattaggcgtgtcc-cgtgtctga 226  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  4990904 gtcctaagctatgaagcacggacactcctcggattaggcgtgtccacgtgtctga 4990958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 34185050 - 34185090
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  34185050 aactatgaagcacggacactcctcggattaggcgtgtcccg 34185090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 13845465 - 13845515
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc-ccgtgtctgacacg 230  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  13845465 ctatgaagcacggacactccttggataaggcgtgtctccgtgtcagacacg 13845515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 20503584 - 20503546
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccg 20503546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 15999951 - 15999988
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15999951 tatgatgcacggacactccttggattaggcgtgtcccg 15999988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 11610628 - 11610576
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg-tgtctgacacgac 232  Q
    |||||||||||||||||||||  |||||||||||||||| |||| ||||||||    
T  11610628 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacgac 11610576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 28918120 - 28918072
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    |||||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  28918120 atgaagcagggacactccttggattaggcgtgtcccagtgtcggacacg 28918072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 1389956 - 1389921
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||||||||||||| |||||    
T  1389956 tatgaagcacggacactccttggattaggcatgtcc 1389921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 5407192 - 5407235
Alignment:
Q  174 tcctaaactatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||| |||||||||| |||||||| |||||||||||||||||    
T  5407192 tcctaacctatgaagcatggacactctttggattaggcgtgtcc 5407235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 8842448 - 8842413
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8842448 ctatgaagcacggacactcctcggattaggcgtgtc 8842413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 55401194 - 55401159
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtc 55401159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 2408590 - 2408628
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  2408590 ctatgaagcacggagactccttagattaggcgtgtcccg 2408628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 8789489 - 8789523
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtc 216  Q
    |||||||||||||||||||| ||||||||||||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgtc 8789523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 14979268 - 14979230
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  14979268 ctatgaagcacggacactcctcgggttaggcgtgtcccg 14979230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 27505370 - 27505332
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccg 27505332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 35223061 - 35223007
Alignment:
Q  177 taaactatgaagcacggacactccttggattaggcgtgt-cccgtgtctgacacg 230  Q
    ||||||||||||||||||||||||| |||| | |||||| |||||||| ||||||    
T  35223061 taaactatgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacg 35223007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 40052431 - 40052393
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccg 40052393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 40993275 - 40993313
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccg 40993313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 41961579 - 41961629
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    |||||||||||||||||| || |||||||||||||||| ||||| ||||||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacg 41961629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 14209250 - 14209205
Alignment:
Q  174 tcctaaactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||| |||||||||||||||||| ||||||||||| || |||||    
T  14209250 tcctaacctatgaagcacggacacttcttggattaggtgtatcccg 14209205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 34910435 - 34910398
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  34910435 tatgaagcacggacactcctcggattagacgtgtcccg 34910398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 209
Target Start/End: Original strand, 51206292 - 51206321
Alignment:
Q  180 actatgaagcacggacactccttggattag 209  Q
    ||||||||||||||||||||||||||||||    
T  51206292 actatgaagcacggacactccttggattag 51206321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 4987222 - 4987258
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||| |||||||||||| |||||||||||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccg 4987258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 29508567 - 29508531
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||| |||||||||| |||||||||    
T  29508567 atgaagcacggacacttcttggattagacgtgtcccg 29508531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 37077488 - 37077452
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  37077488 tatgaagcacggacattccttggattaggtgtgtccc 37077452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 13009423 - 13009469
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccgtgtctgaca 228  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  13009423 tatgaagcacggacgctccttggattaggcgtgtcccgtgtcggaca 13009469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 39820547 - 39820498
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtctgacacg 230  Q
    |||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggacacg 39820498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 3951471 - 3951526
Alignment:
Q  176 ctaaactatgaagcacggacactccttggattaggcgtg-tcccgtgtctgacacg 230  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  3951471 ctaagctatgaagcacggaaactccttggattaggcgtgttcccgtgtcagacacg 3951526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 34450960 - 34451011
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgt-cccgtgtctgacacg 230  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  34450960 actatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacg 34451011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 13436910 - 13436948
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  13436910 ctatgaagcacagacactccttggattaggcgtgtcccg 13436948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 9383085 - 9383044
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgt 222  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  9383085 ctatgaagcacggacactgcttggattaggcgtgtcctgtgt 9383044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 16641903 - 16641947
Alignment:
Q  175 cctaaactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  16641903 cctaaactatgaagcacagacactcctcggattaggtgtgtcccg 16641947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 34127172 - 34127208
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||||||||||||| ||||||    
T  34127172 ctatgaagcacggacactccttggattaggtgtgtcc 34127208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 13397670 - 13397635
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13397670 ctatgaagcacggacactccttgaattaggcgtgtc 13397635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 17751776 - 17751737
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  17751776 actatgaagcgcggacactcctcggattaggcgtgtcccg 17751737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 17760763 - 17760724
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  17760763 actatgaagcgcggacactcctcggattaggcgtgtcccg 17760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 29447040 - 29447075
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||| |||||||||||||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcc 29447075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 31514973 - 31514938
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  31514973 ctatgaagcacggacactcctcggattaggcgtgtc 31514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 4673354 - 4673388
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgt 215  Q
    ||||||||||| |||||||||||||||||||||||    
T  4673354 ctatgaagcacagacactccttggattaggcgtgt 4673388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 15816058 - 15816096
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||| || |||||||||||||||||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccg 15816096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 22652106 - 22652068
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccg 22652068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 25566949 - 25566911
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  25566949 ctatgaagcacagacactcctcggattaggcgtgtcccg 25566911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 29510233 - 29510271
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccg 29510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 11803392 - 11803355
Alignment:
Q  178 aaactatgaagcacggacactccttggattaggcgtgt 215  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  11803392 aaactatgaagcacggacactcctcggattagacgtgt 11803355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 31109463 - 31109512
Alignment:
Q  186 aagcacggacactccttggattaggcgtgtccc-gtgtctgacacgacac 234  Q
    |||||||||||||||| |||||||||||||||| |||||  |||||||||    
T  31109463 aagcacggacactcctcggattaggcgtgtcccagtgtcatacacgacac 31109512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 37283752 - 37283793
Alignment:
Q  178 aaactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||| ||||||| ||||||| |||||||||    
T  37283752 aaactatgaagcacgggcactcctcggattagacgtgtcccg 37283793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 4948754 - 4948706
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtctgacac 229  Q
    |||||||||||| |||||| || ||||||||||||| |||||| |||||    
T  4948754 ctatgaagcacgtacactcattcgattaggcgtgtctcgtgtccgacac 4948706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 16988030 - 16987994
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  16988030 atgaagcacggacactcctcggattaggggtgtcccg 16987994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 36450694 - 36450730
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcc 36450730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 43737752 - 43737788
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  43737752 tatgaagcacggacactccttggataaggcgtatccc 43737788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 9778624 - 9778586
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccg 9778586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 8842282 - 8842317
Alignment:
Q  184 tgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||||||||||||||||||    
T  8842282 tgaagcacggacactccttggattaggcgtgtcccg 8842317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 5409771 - 5409809
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccg 5409809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 29812598 - 29812640
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtc 223  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  29812598 ctatgaagcacggacacttctcggattaggcgtgtcccgtgtc 29812640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 6490838 - 6490797
Alignment:
Q  178 aaactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  6490838 aaactatgaagcacggacactcctcggattaagcgtgtcccg 6490797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 23752018 - 23751969
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtctgacacg 230  Q
    ||||||||||| ||||||  | ||||||||||||||||||||||||||||    
T  23752018 ctatgaagcacagacacttatcggattaggcgtgtcccgtgtctgacacg 23751969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 5307375 - 5307339
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5307375 ctatgaagcacgtacactccttggattaggcgtgtcc 5307339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 7438836 - 7438800
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7438836 ctatgaagcacggacactccttgaattaggcgtgtcc 7438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 28155673 - 28155637
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28155673 ctatgaagcacggacattccttggattaggcgtgtcc 28155637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 29763129 - 29763165
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcc 29763165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 35862070 - 35862034
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| |||||||||||||||    
T  35862070 ctatgaagcacggacactcctcggattaggcgtgtcc 35862034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 32093952 - 32093991
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  32093952 aactatgaagcacgaacactcctcggattaggcgtgtccc 32093991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 40287297 - 40287340
Alignment:
Q  176 ctaaactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||    
T  40287297 ctaaactacgaagcacggacactcctcggattaggcatgtcccg 40287340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 598327 - 598289
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||| || |||||||||||||||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccg 598289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 18035806 - 18035852
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccgtgtctgaca 228  Q
    |||||||||||||||||||| ||||||| ||||| ||||||| ||||    
T  18035806 tatgaagcacggacactcctcggattagacgtgttccgtgtcagaca 18035852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 24339772 - 24339734
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccg 24339734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 28973881 - 28973919
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  28973881 ctatgaagcacggacacacctcggattaggcgtgtcccg 28973919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 30813916 - 30813882
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgt 215  Q
    ||||||||||||||||||||| |||||||||||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtgt 30813882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 43027404 - 43027442
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccg 43027442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 3991432 - 3991395
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  3991432 ctatgaagcccggacactcctcggattaggcgtgtccc 3991395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 19213914 - 19213881
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcg 212  Q
    ||||||||||||||||||||||| ||||||||||    
T  19213914 aactatgaagcacggacactcctcggattaggcg 19213881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 32287404 - 32287441
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccg 32287441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 1433578 - 1433542
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcc 1433542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 18215144 - 18215192
Alignment:
Q  188 gcacggacactccttggattaggcgtgtccc-gtgtctgacacgacacc 235  Q
    ||||||||||||||  ||||||||||||||| ||||| |||||||||||    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcggacacgacacc 18215192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 21880271 - 21880235
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||| || |||||||||||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcc 21880235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 31385048 - 31385011
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccg 31385011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 10649407 - 10649371
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  10649407 ctatgaagcacggacactccttggattaggcgtgtcc 10649371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 4878061 - 4878014
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtctgaca 228  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcctgtgtcggaca 4878014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 17327590 - 17327640
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacg 17327640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 34446691 - 34446653
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  34446691 actatgaagcacggacactccttggattaggtgtgtccc 34446653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 8805524 - 8805580
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc--cgtgtctgacacgacacc 235  Q
    ||||||||||||||||||||| ||||||||| |||||  |||||||||||| |||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcccacgtgtctgacactacacc 8805580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 18367966 - 18367929
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18367966 ctatgaagcacggacactccttggataaggcgtgtccc 18367929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 9025448 - 9025500
Alignment:
Q  184 tgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacgacacc 235  Q
    ||||||||||||||| || |||||||||||||||| ||||| |||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgacacc 9025500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 6389852 - 6389809
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtcccgtgtc 223  Q
    ||||||||||||||||||| || |||||||| ||||||||||||    
T  6389852 actatgaagcacggacacttctcggattaggagtgtcccgtgtc 6389809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 9027286 - 9027231
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacgacacc 235  Q
    |||||||||||  |||||||||||||||| |||||||| ||||| |||||||||||    
T  9027286 ctatgaagcacaaacactccttggattagccgtgtcccggtgtcggacacgacacc 9027231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 32978842 - 32978877
Alignment:
Q  184 tgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||||||| |||||||||    
T  32978842 tgaagcacggacactccttggattagacgtgtcccg 32978877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 7723199 - 7723233
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgt 215  Q
    ||||||||||||||||||||| |||||||||||||    
T  7723199 ctatgaagcacggacactcctcggattaggcgtgt 7723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 7996325 - 7996359
Alignment:
Q  184 tgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||| |||||||||||||||||||||||    
T  7996325 tgaagcacggagactccttggattaggcgtgtccc 7996359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 8022476 - 8022442
Alignment:
Q  184 tgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||| |||||||||||||||||||||||    
T  8022476 tgaagcacggagactccttggattaggcgtgtccc 8022442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 8365448 - 8365498
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    |||||||||||||| |||||| |||||||||||||||| ||||| ||||||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacg 8365498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 17841530 - 17841564
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtc 216  Q
    |||||||||||||||||||| ||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtc 17841564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 34595253 - 34595215
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccg 34595215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 10339054 - 10339091
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||||||||||||  |||||||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtccc 10339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 13360311 - 13360348
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  13360311 aactatgaagcacggacactcttcggattaggcgtgtc 13360348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 31959268 - 31959231
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccg 31959231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 426478 - 426514
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||||  ||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtcc 426514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 5732474 - 5732510
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||| |||||||||| |||||||||||||||    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtcc 5732510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 23292925 - 23292964
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccg 23292964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 5775304 - 5775342
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  5775304 ctatgaagcacggacactcctcggattaggcgtgtcccg 5775342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 715545 - 715582
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccc 715582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 752871 - 752908
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccc 752908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 4383484 - 4383443
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccgtgtc 223  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  4383484 tatgaagcacggacactcctcggattaggcgtgtccggtgtc 4383443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 30982808 - 30982845
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccg 30982845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 3064868 - 3064903
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3064868 ctatgaagcacggacactcctcggattaggcgtgtc 3064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 5414100 - 5414151
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||    
T  5414100 actatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacg 5414151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 7424774 - 7424727
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccgtgtctgacacg 230  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||||    
T  7424774 atgaagcatggacactccttggattaggcgtgtacggtgtcggacacg 7424727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 18966628 - 18966589
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgt 220  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  18966628 ctatgaagcacggacactccttagattaggcgtatcccgt 18966589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 20633590 - 20633555
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtc 216  Q
    |||||||||||| |||||||||||||||||||||||    
T  20633590 ctatgaagcacgaacactccttggattaggcgtgtc 20633555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 23386279 - 23386228
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtcccgtgtctgacacg 230  Q
    |||||||||||||||||||||||  |||||||| |||||| |||| ||||||    
T  23386279 aactatgaagcacggacactcctctgattaggcatgtcccttgtcggacacg 23386228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 28084640 - 28084593
Alignment:
Q  184 tgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    |||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacg 28084593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 28964186 - 28964225
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  28964186 aactatgaagcatggacactcctcggattaggcgtgtccc 28964225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 34515811 - 34515858
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtctgaca 228  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||| ||||    
T  34515811 ctatgaatcacagacactccttggattagacgtgtcccgtgtcggaca 34515858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 36635449 - 36635402
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgac 227  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||||    
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtctgac 36635402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 11596297 - 11596335
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgtgtcccg 11596335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 12884343 - 12884385
Alignment:
Q  177 taaactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||    
T  12884343 taaactatgaagcacggacactcctcggattagacgtgccccg 12884385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 12895214 - 12895252
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcccg 12895252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 22440559 - 22440593
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||| |||||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcc 22440593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 28470484 - 28470446
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcccg 28470446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 30299048 - 30299010
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  30299048 ctatgaagcacggacactcctcggattagacgtgtcccg 30299010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 30327916 - 30327878
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  30327916 ctatgaagcacggacactcctcggattagacgtgtcccg 30327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 40784072 - 40784034
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  40784072 ctatgaagcacggacactcctcggattaggtgtgtcccg 40784034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 53381530 - 53381568
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccg 53381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 848080 - 848043
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  848080 tatgaaacacggacactccttggattaggtgtgtcccg 848043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 19500787 - 19500820
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtg 214  Q
    |||||||||||||| |||||||||||||||||||    
T  19500787 ctatgaagcacggatactccttggattaggcgtg 19500820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 29205587 - 29205550
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtccc 29205550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 2625959 - 2625995
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||| |||||||| |||||||||||||    
T  2625959 ctatgaagcacggatactccttgaattaggcgtgtcc 2625995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 11931410 - 11931374
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  11931410 ctatgaagcacggacactccatggattaggtgtgtcc 11931374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 17425348 - 17425396
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcc-cgtgtctgacac 229  Q
    |||||||||| ||||||||| |||||||||||||||  |||||||||||    
T  17425348 tatgaagcacagacactcctcggattaggcgtgtccttgtgtctgacac 17425396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 17876285 - 17876249
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  17876285 ctatgaagcacagacactccttggattaggtgtgtcc 17876249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 18513175 - 18513211
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||||  ||||||||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcc 18513211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 18844423 - 18844459
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||| || |||||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtcc 18844459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 24613630 - 24613666
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  24613630 ctatgaagcacggacactcctaggattagacgtgtcc 24613666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 42640643 - 42640607
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||| |||||| |||||||||||||||    
T  42640643 ctatgaagcacggaaactcctcggattaggcgtgtcc 42640607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 18255945 - 18255980
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcc 217  Q
    ||||||||||||||||||||||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtcc 18255980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 23354582 - 23354629
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccgtgtctgacac 229  Q
    |||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  23354582 tatgaaccacggacactcctcggattaggcgtgtcccgtgtcagacac 23354629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 23354926 - 23354973
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccgtgtctgacacg 230  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  23354926 atgaagcaaggacactcctcggattaggcgtgtcccgtgtcagacacg 23354973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 24009414 - 24009364
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgt-cccgtgtctgacacg 230  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  24009414 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacg 24009364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 26769641 - 26769591
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacg 26769591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 37419873 - 37419835
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccg 37419835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 30717459 - 30717496
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  30717459 ctatgaagcacggacactccttggattaggcgtatccc 30717496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 2438661 - 2438697
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccg 2438697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 18840951 - 18840991
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  18840951 aactatgaagcacggacactcctcggattaggtgtgtcccg 18840991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 42832234 - 42832270
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||| ||||||||||||||||||||||||||||    
T  42832234 atgaagcaaggacactccttggattaggcgtgtcccg 42832270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 18631349 - 18631400
Alignment:
Q  179 aactatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacac 229  Q
    ||||||||||| ||||||||||| | |||||||||||||| |||||||||||    
T  18631349 aactatgaagctcggacactcctcgcattaggcgtgtcccagtgtctgacac 18631400  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 38117098 - 38117137
Alignment:
Q  180 actatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  38117098 actatgaagcacggacacccctcggattaggcgtgtcccg 38117137  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 11223793 - 11223831
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccg 11223831  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 34221463 - 34221501
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  34221463 ctatgaagcacggaaactcctcggattaggcgtgtcccg 34221501  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 42511322 - 42511372
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||| ||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacg 42511372  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 34993922 - 34993959
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  34993922 ctatgaagcacgaacactccttgaattaggcgtgtccc 34993959  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 3444827 - 3444863
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtccc 218  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  3444827 tatgaagcacggacactcctcggattaggcatgtccc 3444863  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 10535685 - 10535721
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||| |||||||| |||||||||||||||    
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcc 10535721  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 19536361 - 19536397
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||| |||||||||| |||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtcc 19536397  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 19942382 - 19942346
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||| |||||||||| |||||||||||||||||    
T  19942382 atgaagcatggacactcctcggattaggcgtgtcccg 19942346  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 21616864 - 21616828
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||| |||||||||| |||||||    
T  21616864 ctatgaagcacggacacttcttggattagccgtgtcc 21616828  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 28596592 - 28596552
Alignment:
Q  177 taaactatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||| |||||||||||||||||||| |||||||| ||||||    
T  28596592 taaagtatgaagcacggacactcctcggattaggagtgtcc 28596552  T

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Target: scaffold0380 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 8720 - 8670
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc-gtgtctgacacg 230  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  8720 ctatgaagcacggacactccttggattaggcgtatcccagtgtcggacacg 8670  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 46779 - 46741
Alignment:
Q  178 aaactatgaagcacggacactccttggattaggcgtgtc 216  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  46779 aaactatgaagcacggacactcctcggattaggcgtgtc 46741  T

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Target: scaffold0793 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 4821 - 4858
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccc 4858  T

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Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 3427 - 3390
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtccc 218  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  3427 ctatgaagcacggacactcctcggattaggcgtgtccc 3390  T

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Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 24155 - 24107
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccgtgtctgacac 229  Q
    ||||||||||||||||||| | ||||||||||||||| ||||| |||||    
T  24155 ctatgaagcacggacactcatcggattaggcgtgtccagtgtcggacac 24107  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 92940 - 92905
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||| |||||||||||||||    
T  92940 tatgaagcacggacactcctcggattaggcgtgtcc 92905  T

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Target: scaffold0306 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 13523 - 13489
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||||||||||| ||||||    
T  13523 atgaagcacggacactccttggattaggtgtgtcc 13489  T

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Target: scaffold0152 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 21804 - 21838
Alignment:
Q  183 atgaagcacggacactccttggattaggcgtgtcc 217  Q
    |||||||||||||||||||||||||||| ||||||    
T  21804 atgaagcacggacactccttggattaggtgtgtcc 21838  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 241724 - 241686
Alignment:
Q  181 ctatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||| || |||||||||||||||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccg 241686  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 403 - 440
Alignment:
Q  182 tatgaagcacggacactccttggattaggcgtgtcccg 219  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccg 440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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