View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_low_15 (Length: 244)
Name: NF2996_low_15
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1163244 - 1163019
Alignment:
| Q |
1 |
tattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatttactttcctgtcttcc |
100 |
Q |
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| T |
1163244 |
tattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatttactttcctgtcttcc |
1163145 |
T |
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| Q |
101 |
atgcatgtgttacactaggaatcttacagatgcaggtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctgtttcgtaaatttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1163144 |
atgcatgtgttacactaggaatcttacagatgcaggtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctgtttcgtaaatttta |
1163045 |
T |
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| Q |
201 |
aacagttgtttgtttgtggtatagta |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1163044 |
aacagttgtttgtttgtggtatagta |
1163019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 40418870 - 40419069
Alignment:
| Q |
5 |
agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatttactttcctgtcttccatgc |
104 |
Q |
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| T |
40418870 |
agaacaagttacgtgtgttgatcgtgcttcacaaaccatgcctgtcattatattcggcataaaaagttcctttcacca-----tttcatgtcttc----c |
40418960 |
T |
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| Q |
105 |
atgtgttacactaggaatcttacagatgcaggtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctgtttcgtaaattttaaaca |
204 |
Q |
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| T |
40418961 |
atgtggtacactagaaagcttacagatacaattaagcagctaatatgcattggttcgatcttctctgctacgtaaatatctgtttcataaatctttaaca |
40419060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 39880427 - 39880495
Alignment:
| Q |
17 |
gtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccattt |
85 |
Q |
| |
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||||||||||| ||||||||||| |||| |||||| ||||||||||||| |||||| |||||||||||| |
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| T |
39880427 |
gtgtgttgatcttgcttcccaaaacatgtctgtcaatatattcggcataaaaagttactttcaccattt |
39880495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 38988292 - 38988336
Alignment:
| Q |
5 |
agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgt |
49 |
Q |
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| T |
38988292 |
agaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt |
38988336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 3300086 - 3300147
Alignment:
| Q |
28 |
gtgcttcccaaaccatgcctgtcatta----tattcggcatataaagttcctttcaccattt |
85 |
Q |
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| T |
3300086 |
gtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccattt |
3300147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 3392979 - 3393040
Alignment:
| Q |
28 |
gtgcttcccaaaccatgcctgtcatta----tattcggcatataaagttcctttcaccattt |
85 |
Q |
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| T |
3392979 |
gtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccattt |
3393040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 39400512 - 39400549
Alignment:
| Q |
144 |
ctaatatgcattggtttgatcttctctgctatgtaaat |
181 |
Q |
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| T |
39400512 |
ctaatatgcattggtttgattttctatgctatgtaaat |
39400549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 25911775 - 25911553
Alignment:
| Q |
5 |
agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcac------------------cattta |
86 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||| |
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| T |
25911775 |
agaacaagttacgtgtgttgatcatgcttcccaaaccatgtctgtcattatattcggcataaaaaattcctttcactatttcacctcaccctaccattta |
25911676 |
T |
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| Q |
87 |
ctttcctgtcttccatgcatgtgttacactaggaatcttacagatgcaggtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctg |
186 |
Q |
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||||||||||||||||| || |||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25911675 |
ctttcctgtcttccatg----tggtacactagaaatcttacagacacagttaagcagctaatatacattggtttgatcttctctgctatgtaaatatctg |
25911580 |
T |
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| Q |
187 |
tttcgtaaattttaaacagttgtttgt |
213 |
Q |
| |
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|||| ||||| || ||||||||||||| |
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| T |
25911579 |
tttcataaatctttaacagttgtttgt |
25911553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 44444272 - 44444207
Alignment:
| Q |
5 |
agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaag |
70 |
Q |
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||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
44444272 |
agaacaagttacgtgtgttactcgtgcttcccaaaccatgcgagtcataatattcgaaatataaag |
44444207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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