View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_low_16 (Length: 241)
Name: NF2996_low_16
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 30935282 - 30935454
Alignment:
| Q |
18 |
aatatatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcataggggaagatttgccaattcaa |
117 |
Q |
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| T |
30935282 |
aatatatagtggcagagcctttcttttcaagaatgtgagcttcatcaaaataatttgtggctttcctaagtagctcataggggaagatttgccacttcaa |
30935381 |
T |
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| Q |
118 |
tttattctgctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccattgcc |
190 |
Q |
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| T |
30935382 |
tttattctgctttggaaatatgtcagaagtgctagtgaagcagcagcacatacagagatcccaccccattgcc |
30935454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 30994191 - 30994360
Alignment:
| Q |
18 |
aatatatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcataggggaagatttgccaattcaa |
117 |
Q |
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|||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30994191 |
aatatacagtgggcgagcctttcttatcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcatatgggaagatttgccaattcaa |
30994290 |
T |
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| Q |
118 |
tttattctgctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccatt |
187 |
Q |
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| T |
30994291 |
tttactctgctttggaaatgtttcagatgtgctagtgaagcagcaacacatacagatatcccacctcatt |
30994360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 30965444 - 30965507
Alignment:
| Q |
18 |
aatatatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttt |
81 |
Q |
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| T |
30965444 |
aatatacagtggccgagcctctcttttcaagaatgtgagcttgatcaaaataatatgtggcttt |
30965507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 30965503 - 30965564
Alignment:
| Q |
126 |
gctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccatt |
187 |
Q |
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||||||||||| | ||||||||||||||||||||||| |||||| ||||||| |||| |||| |
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| T |
30965503 |
gctttggaaatgtttcagaagtgctagtgaagcagcagcacatagagagatctcacctcatt |
30965564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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