View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_low_17 (Length: 237)
Name: NF2996_low_17
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37635173 - 37635394
Alignment:
| Q |
1 |
tacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgttggggtgttccaagtggtgaa |
100 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37635173 |
tacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaa |
37635272 |
T |
|
| Q |
101 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37635273 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaagctaacaccgctccac |
37635372 |
T |
|
| Q |
201 |
gacccattttattattattttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
37635373 |
gacccattttattattattttt |
37635394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37638087 - 37638308
Alignment:
| Q |
1 |
tacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgttggggtgttccaagtggtgaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37638087 |
tacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaa |
37638186 |
T |
|
| Q |
101 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37638187 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaagctaacaccgctccac |
37638286 |
T |
|
| Q |
201 |
gacccattttattattattttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
37638287 |
gacccattttattattattttt |
37638308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37646375 - 37646596
Alignment:
| Q |
1 |
tacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgttggggtgttccaagtggtgaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37646375 |
tacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaa |
37646474 |
T |
|
| Q |
101 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37646475 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaagctaacaccgctccac |
37646574 |
T |
|
| Q |
201 |
gacccattttattattattttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
37646575 |
gacccattttattattattttt |
37646596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37649288 - 37649509
Alignment:
| Q |
1 |
tacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgttggggtgttccaagtggtgaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37649288 |
tacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaa |
37649387 |
T |
|
| Q |
101 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
37649388 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaagctaacaccgctccac |
37649487 |
T |
|
| Q |
201 |
gacccattttattattattttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37649488 |
gacccattttattattattttt |
37649509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 37652200 - 37652415
Alignment:
| Q |
1 |
tacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgttggggtgttccaagtggtgaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37652200 |
tacattaacaacgacattgttgttgctagtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaa |
37652299 |
T |
|
| Q |
101 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaa---gctaacaccgctc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||| |
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| T |
37652300 |
atggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccataaacggtgacgcctaagaggcatagcatcaaagctgctaacatcgctc |
37652399 |
T |
|
| Q |
198 |
cacgacccattttatt |
213 |
Q |
| |
|
|||| ||||||||||| |
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| T |
37652400 |
cacggcccattttatt |
37652415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 37643531 - 37643683
Alignment:
| Q |
70 |
gataccctgttggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaag |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37643531 |
gataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacacctaaa |
37643630 |
T |
|
| Q |
170 |
aggcatagcataaaagctaacaccgctccacgacccattttattattattttt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37643631 |
aggcatagcataaaagctaacaccgctccacgaccgattttattattattttt |
37643683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37641001 - 37641074
Alignment:
| Q |
1 |
tacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaataaggatac |
74 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
37641001 |
tacattagcaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccattaataaggatac |
37641074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 32388526 - 32388657
Alignment:
| Q |
17 |
ttgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgttggggtgttccaagtggtgaaatggtaccataggtaa |
116 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||| |||||||||||||| || || ||||||| ||| || || || | |||| |||| |||||||||||| |
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|
| T |
32388526 |
ttgttgttgctggtaccgttaatttcaggtcccgggaattgaccgttgatgagaatacccttttgaggagtacccaaaggtgcaatgttaccataggtaa |
32388625 |
T |
|
| Q |
117 |
ccttccatgtatagtaaatgtaaggatcttca |
148 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |
|
|
| T |
32388626 |
ccttccatgtatagtacacataaggatcttca |
32388657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 5884177 - 5884305
Alignment:
| Q |
33 |
tgttgatttcaggtcctgggaattgaccgttaataaggataccctgttggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagta |
132 |
Q |
| |
|
||||||||| ||||| |||| | ||| ||| |||||||||| | ||||||| | || | ||||||||||||||||||||||| |||||||| |||| |
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|
| T |
5884177 |
tgttgattttaggtcatgggtaatgatcgtcaataaggatagcttgttgggagatatcatgaggtgaaatggtaccataggtaacattccatgtgaagta |
5884276 |
T |
|
| Q |
133 |
aatgtaaggatcttcaccgtaaacggtga |
161 |
Q |
| |
|
||||||||| |||||||| ||||| |||| |
|
|
| T |
5884277 |
aatgtaagggtcttcaccataaacagtga |
5884305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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