View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_low_18 (Length: 236)
Name: NF2996_low_18
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 30552114 - 30551924
Alignment:
| Q |
11 |
gcacagatcacaatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattatcacaacatgtttttgttatactaaactatt |
110 |
Q |
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| T |
30552114 |
gcacagatcacaatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattat-------------------acaaaactatt |
30552034 |
T |
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| Q |
111 |
ttcgtttatgtatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatcc |
210 |
Q |
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| T |
30552033 |
ttcgtttatgtatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatcc |
30551934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 30560686 - 30560592
Alignment:
| Q |
126 |
taaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagtttttcc |
220 |
Q |
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| T |
30560686 |
taaaagaaaagcataccttgtaaaacaataatttcagtcgttccacttcatcgatttgtcttaaaagattatatgcttgaaaaccaagttcttcc |
30560592 |
T |
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