View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2996_low_2 (Length: 785)

Name: NF2996_low_2
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2996_low_2
NF2996_low_2
[»] chr4 (25 HSPs)
chr4 (271-767)||(8186710-8187206)
chr4 (62-382)||(570082-570446)
chr4 (271-518)||(8183898-8184145)
chr4 (273-518)||(1524354-1524599)
chr4 (271-593)||(7225676-7225998)
chr4 (414-518)||(12121325-12121429)
chr4 (274-518)||(55908596-55908840)
chr4 (267-382)||(1548428-1548543)
chr4 (414-518)||(1489229-1489333)
chr4 (274-366)||(553466-553558)
chr4 (271-638)||(546897-547264)
chr4 (336-515)||(1600468-1600647)
chr4 (270-382)||(1552771-1552883)
chr4 (342-466)||(53761692-53761816)
chr4 (327-385)||(1519143-1519201)
chr4 (413-500)||(1533876-1533963)
chr4 (271-518)||(3438434-3438680)
chr4 (430-500)||(1495808-1495878)
chr4 (277-387)||(1513406-1513516)
chr4 (336-473)||(659758-659895)
chr4 (414-518)||(1537635-1537739)
chr4 (336-387)||(1489360-1489411)
chr4 (271-386)||(1537767-1537882)
chr4 (412-604)||(1548208-1548397)
chr4 (336-385)||(12121458-12121507)
[»] chr6 (13 HSPs)
chr6 (119-262)||(12102116-12102259)
chr6 (295-382)||(12102274-12102361)
chr6 (336-518)||(6416015-6416194)
chr6 (275-382)||(11936279-11936386)
chr6 (275-382)||(11948259-11948366)
chr6 (277-467)||(6432151-6432341)
chr6 (397-526)||(7119267-7119393)
chr6 (397-526)||(7131745-7131871)
chr6 (397-534)||(10579591-10579725)
chr6 (336-466)||(6589243-6589373)
chr6 (414-467)||(6402987-6403040)
chr6 (293-364)||(28935055-28935126)
chr6 (330-384)||(6423260-6423314)
[»] chr8 (11 HSPs)
chr8 (273-605)||(18315054-18315386)
chr8 (196-382)||(21235445-21235653)
chr8 (273-386)||(32151287-32151400)
chr8 (282-384)||(27922503-27922605)
chr8 (279-385)||(17636402-17636508)
chr8 (452-508)||(17643471-17643527)
chr8 (275-382)||(28246299-28246404)
chr8 (271-515)||(34936034-34936278)
chr8 (327-382)||(17628018-17628073)
chr8 (418-535)||(32151432-32151546)
chr8 (413-518)||(17636265-17636370)
[»] chr3 (8 HSPs)
chr3 (271-518)||(51113652-51113896)
chr3 (279-386)||(51120893-51121000)
chr3 (271-466)||(13470652-13470847)
chr3 (397-499)||(514615-514717)
chr3 (275-382)||(1657239-1657346)
chr3 (325-368)||(27005790-27005833)
chr3 (418-500)||(1657378-1657460)
chr3 (342-380)||(33714861-33714899)
[»] scaffold0105 (1 HSPs)
scaffold0105 (338-520)||(492-674)
[»] chr2 (3 HSPs)
chr2 (274-518)||(1037532-1037776)
chr2 (272-500)||(32785661-32785886)
chr2 (277-386)||(45245085-45245194)
[»] chr5 (3 HSPs)
chr5 (282-384)||(32267470-32267572)
chr5 (282-379)||(41901542-41901639)
chr5 (418-463)||(28525142-28525187)
[»] chr1 (4 HSPs)
chr1 (417-518)||(9581198-9581299)
chr1 (417-518)||(9586766-9586867)
chr1 (266-353)||(7554467-7554554)
chr1 (342-384)||(52082636-52082678)
[»] chr7 (2 HSPs)
chr7 (409-467)||(10614715-10614773)
chr7 (410-484)||(7977701-7977775)
[»] scaffold0295 (1 HSPs)
scaffold0295 (397-478)||(532-613)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 271 - 767
Target Start/End: Complemental strand, 8187206 - 8186710
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    |||||||  ||||||||||||| |||||||||||||||   |||  ||  ||  | |||||||| |||||||||||||||||||||||||||||||||||    
T  8187206 agtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaa 8187107  T
Q  371 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  8187106 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttc 8187007  T
Q  471 agatatgtcatagcaatgactcaaatcaagcaactgcagattggggaataaggaagataacatttcgaggttttcattacttaaccaacaattgtgaatc 570  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8187006 agatatgtcatagcaatgactcaaatcaagcaactgcaaattggggaataaggaagataacatttcgaggttttcattacttaaccaacaattgtaaatc 8186907  T
Q  571 aaactgagagacttcagttgaggacttgcaacaaaatccaccaaagagctagaattctctaaactctctacgctcatacatttgaattccactttgatct 670  Q
    ||||||||||||||||||||||| ||| || ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8186906 aaactgagagacttcagttgaggtcttacaccaaaatcaaccaaacagctagcattctctaaactctctacgctcatacatttgaattccactttgatct 8186807  T
Q  671 cactaagtgaagggaaattcctaatgaaagcaaacaacattgcgcagtcttgatcgaaataatcggtaaaggataaagacctcaactttggtctctc 767  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8186806 cactaagtgaagggaaattcctaatgaatgcatacaactttgcacagtcttgatcgaaataatcggtaaaggataaagacctcaacgttggtctctc 8186710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 62 - 382
Target Start/End: Original strand, 570082 - 570446
Alignment:
Q  62 aaacttcagcagaggatttgcaaaatattagcagagaaggcagacatgactcaagaagagttccctctttttgttgttgaaacgataacgaggtggtaca 161  Q
    ||||||| ||||| || |||||||||| |||| ||||||||| ||||||| ||||||||| |||||||| |||||||||||||| ||||||||||| |||    
T  570082 aaacttcggcagaagagttgcaaaatactagccgagaaggcatacatgacccaagaagagctccctcttgttgttgttgaaacggtaacgaggtggaaca 570181  T
Q  162 gt----------------------gataataccatcgagtcaacaacattatgaagcactttatagcagttcttcagattgttctctctcagttgtgtgc 239  Q
    ||                      ||||||| |||||||||||||| ||| | | ||||||||||||||||||||| |||| |||| |||||||||||||    
T  570182 gttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagttgtgtgc 570281  T
Q  240 agctttctaccacatgatccatgcctcttttagt----------------------aacagttgcaaaagcccacgacaactctttgaaatcagatagcg 317  Q
    || ||||||||||||||| || ||||||||||||                      ||||||||||||||||| |||||||||||||||||||||||| |    
T  570282 agttttctaccacatgattcacgcctcttttagtaacataataacaatgctcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagag 570381  T
Q  318 ttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 382  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||||||  || |||||||||||    
T  570382 ttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttca 570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 271 - 518
Target Start/End: Complemental strand, 8184145 - 8183898
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    |||||||||| ||||||||||| |||||||||||| ||   |||| || ||   | |||||||| |||||||||||||||||||||||| ||||| | ||    
T  8184145 agtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaa 8184046  T
Q  371 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttc 470  Q
     |||||||||||||| |   ||||  | | |||||  ||| |||||||||||||| |||||||||||||| ||| |||| | ||||  |||||||| |||    
T  8184045 cttcaaagttcattctgctcagcctcatttttggaatgtaagctaagttcaaatctctaatctcacaacaactccttaaaatttgagtaatacctttttc 8183946  T
Q  471 agatatgtcatagcaatgactcaaatcaagcaactgcagattggggaa 518  Q
    ||| |||||| ||||||||||||||||||||  ||||| |||||||||    
T  8183945 agaaatgtcaaagcaatgactcaaatcaagccgctgcaaattggggaa 8183898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 273 - 518
Target Start/End: Complemental strand, 1524599 - 1524354
Alignment:
Q  273 taacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatt 372  Q
    ||||||||||||||||||||||||||||| ||| |||| |||| ||  ||| | |||||| | |||| ||||||| |||||||||||||  |||| || |    
T  1524599 taacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaact 1524500  T
Q  373 tcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcag 472  Q
    ||||||||||||||    ||  | | | | | ||||| |||||||||||||| |||||  | |||||||||| |||| || |||  ||||||||||||||    
T  1524499 tcaaagttcattccatgaagttctattttagaacagttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcag 1524400  T
Q  473 atatgtcatagcaatgactcaaatcaagcaactgcagattggggaa 518  Q
    ||| ||   |||||| ||| |||||||||| ||||| |||||||||    
T  1524399 atacgtatgagcaataacttaaatcaagcagctgcaaattggggaa 1524354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 271 - 593
Target Start/End: Complemental strand, 7225998 - 7225676
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    ||||| ||||||||||| |||| |||||||||||| |||| |    || ||| || |||||||| |||||||||||||||||| ||||||| || |  ||    
T  7225998 agtaatagttgcaaaagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaa 7225899  T
Q  371 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttc 470  Q
     ||||||||||||   |   |||   |||||||||||||||| |||||||||||  ||||||| ||||||||||  ||| ||||||||||  ||||||||    
T  7225898 cttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaacttgacaaaccccttcttc 7225799  T
Q  471 agatatgtcatagcaatgactcaaatcaagcaactgcagattggggaataaggaagataacatttcgaggttttcattacttaaccaacaattgtgaatc 570  Q
    | | |||| || | ||   ||||||||||||| || || |||||||||| |||| |  ||   ||| | |||||||||  ||||||||| ||||  || |    
T  7225798 atacatgttatgggaagagctcaaatcaagcagctccaaattggggaatgaggatgcaaatgcttccatgttttcatttgttaaccaacgattggaaacc 7225699  T
Q  571 aaactgagagacttcagttgagg 593  Q
    ||||| |||||||| | ||||||    
T  7225698 aaactcagagactttaattgagg 7225676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 12121429 - 12121325
Alignment:
Q  414 taagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattg 513  Q
    ||||||||||| | |||||||  ||||| || ||||||||||  ||||||||||||||||||||| |||||||  ||||||||||||||| |||| ||||    
T  12121429 taagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatatgttatagcaaaaactcaaatcaagcaattgcaaattg 12121330  T
Q  514 gggaa 518  Q
    |||||    
T  12121329 gggaa 12121325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 274 - 518
Target Start/End: Complemental strand, 55908840 - 55908596
Alignment:
Q  274 aacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaattt 373  Q
    |||||||| |||||||||| |||| ||||||| |||| |||| ||  ||| | |||||| ||||||||||||||||| |||||||| | ||  | || ||    
T  55908840 aacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactt 55908741  T
Q  374 caaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcaga 473  Q
     |||||| ||||     ||    ||||||| |||||||||||| |||||||  |||| || |||||||||| |||  |||| ||||||||||||||||||    
T  55908740 taaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcaga 55908641  T
Q  474 tatgtcatagcaatgactcaaatcaagcaactgcagattggggaa 518  Q
    ||||| || |||    ||||||||||| || |||| |||||||||    
T  55908640 tatgttatggcaggagctcaaatcaagaaattgcaaattggggaa 55908596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 382
Target Start/End: Complemental strand, 1548543 - 1548428
Alignment:
Q  267 ttttagtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttg 366  Q
    |||| ||||||  ||||||||||||| |||||||||||| |||| || | ||  ||| | |||||  | |||||||||||||||||||||||||||||||    
T  1548543 tttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttg 1548444  T
Q  367 gaaatttcaaagttca 382  Q
    | ||||||||||||||    
T  1548443 ggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 1489333 - 1489229
Alignment:
Q  414 taagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattg 513  Q
    ||||||||||| |||||| ||| ||||| ||||||| || ||  ||||||||||||||||||||| |||||||| | |||||| |||||| |||| ||||    
T  1489333 taagttcaaatgcctaatatcagaacatgtctttaaaacatggaaaataccttcttcagatatgttatagcaataagtcaaattaagcaattgcaaattg 1489234  T
Q  514 gggaa 518  Q
    |||||    
T  1489233 gggaa 1489229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 553466 - 553558
Alignment:
Q  274 aacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttg 366  Q
    ||||||||||||||||||  ||||||||||||||||| ||   || |||| | |||||||| ||||  |||||||||||||||||||||||||    
T  553466 aacagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttg 553558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 638
Target Start/End: Original strand, 546897 - 547264
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    ||||||| || ||||||||||| |||||||||||| |||| |||| ||  ||| | ||  ||   |||| |||||||||||| |||||||| ||| | ||    
T  546897 agtaacaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaa 546996  T
Q  371 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttc 470  Q
     |||||||||||||||  | ||    |||  |  ||| | || ||||||||||| ||| |||| |||||||||| |||| || | ||||||||  |||||    
T  546997 cttcaaagttcattccaaataggttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttc 547096  T
Q  471 agatatgtcatagcaatgactcaaatcaagcaactgcagattggggaataaggaagataacatttcgaggttttcattacttaaccaacaattgtgaatc 570  Q
    |||||||| |   |||| ||| ||||||||||  |||| ||||||||| | |||||  ||||||| || | ||||||  ||||  ||  |||| | |  |    
T  547097 agatatgttacgacaataacttaaatcaagcagttgcaaattggggaacatggaaggaaacattttgatgctttcatctcttatgcatgaatttttagcc 547196  T
Q  571 aaactgagagacttcagttgaggacttgcaacaaaatccaccaaagagctagaattctctaaactctc 638  Q
    |||  ||||||||||| |||||| ||| |||||||||||   |||||  |||||||||||| ||||||    
T  547197 aaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacactctc 547264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 515
Target Start/End: Original strand, 1600468 - 1600647
Alignment:
Q  336 tgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctca 435  Q
    ||||| ||||||||||||||||||||||||   || |||||||||||||||    |||   | | ||| ||| | ||||||||||||||  ||||| | |    
T  1600468 tgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaatttta 1600567  T
Q  436 caacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattggg 515  Q
     || ||||| |||| |||||||||||||||||||||||||||| |  ||||   |||||||||||||  |||| ||||||    
T  1600568 gaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattggg 1600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 1552883 - 1552771
Alignment:
Q  270 tagtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaa 369  Q
    ||||||||| |||||||||||||||||| ||||||| |||| || | ||  ||| | || ||    |||||||||||| |||||||| |||||||||| |    
T  1552883 tagtaacagctgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttggga 1552784  T
Q  370 atttcaaagttca 382  Q
    |||||||||||||    
T  1552783 atttcaaagttca 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 342 - 466
Target Start/End: Complemental strand, 53761816 - 53761692
Alignment:
Q  342 tgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacat 441  Q
    ||||||||||||| |||| || |||| || | |||||||||||||    |||   ||||||| ||| | |||||||||||||| |||||| | |||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  442 ctctttaagacttgacaaatacctt 466  Q
    ||| |||| ||||||||||||||||    
T  53761716 ctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 1519201 - 1519143
Alignment:
Q  327 atcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattc 385  Q
    |||||| | |||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  1519201 atcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 413 - 500
Target Start/End: Complemental strand, 1533963 - 1533876
Alignment:
Q  413 ctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaag 500  Q
    ||||||||||||   | |||| |||||||||| |||| || |||| ||||||||||||||||||||||| ||||| | ||||| ||||    
T  1533963 ctaagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcagatatgtcatcgcaatcattcaaagcaag 1533876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 271 - 518
Target Start/End: Complemental strand, 3438680 - 3438434
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    |||||||||||||||||||||| |||||||||||| || | || | ||  ||  | |||||||| ||||||||||||| |||| ||||||| ||| ||||    
T  3438680 agtaacagttgcaaaagcccacaacaactctttgagattacatggagtattta-tcatcaactcttgtatgtgacaagctcaatacctccaattttgaaa 3438582  T
Q  371 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttc 470  Q
      |||||||||||| |  | |     |||| |  |||    |||||||||||||  ||||||| |||||||||| |||| ||||||  || |||||| ||    
T  3438581 catcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtc 3438482  T
Q  471 agatatgtcatagcaatgactcaaatcaagcaactgcagattggggaa 518  Q
    ||||||||  | ||| |  |||| |||||||| ||||| |||||||||    
T  3438481 agatatgtagtcgcattctctcacatcaagcagctgcaaattggggaa 3438434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 1495878 - 1495808
Alignment:
Q  430 atctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaag 500  Q
    |||| |||||||||| |||| || |||| ||||||||||||||||||||||| ||||| | ||||| ||||    
T  1495878 atcttacaacatctccttaaaacatgaccaataccttcttcagatatgtcatcgcaatcattcaaagcaag 1495808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 387
Target Start/End: Complemental strand, 1513516 - 1513406
Alignment:
Q  277 agttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaa 376  Q
    |||||||||||||||||||||| |||||| || |  ||| ||  ||| | ||||||   ||||  ||||||||||||||| || ||||||| || |||||    
T  1513516 agttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaa 1513417  T
Q  377 agttcattccg 387  Q
    |||||||||||    
T  1513416 agttcattccg 1513406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 473
Target Start/End: Original strand, 659758 - 659895
Alignment:
Q  336 tgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctca 435  Q
    |||||||||||||||||||||||| ||||||| || |||||| || ||| |    |||    |||||| |||| |||||||||| ||||  ||||| | |    
T  659758 tgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatgtta 659857  T
Q  436 caacatctctttaagacttgacaaataccttcttcaga 473  Q
    ||||||||| |||| | ||||| |||| ||||||||||    
T  659858 caacatctccttaaaatttgaccaatatcttcttcaga 659895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 1537739 - 1537635
Alignment:
Q  414 taagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattg 513  Q
    ||||||||||| ||||| |||  ||||| || |||| |||||| |||||||||||||||||||   | |||||| |||||||| || ||| |||| |||     
T  1537739 taagttcaaatgcctaagctcggaacatgtccttaaaacttgaaaaataccttcttcagatattggaaagcaataactcaaattaaacaattgcaaattc 1537640  T
Q  514 gggaa 518  Q
    |||||    
T  1537639 gggaa 1537635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 1489411 - 1489360
Alignment:
Q  336 tgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccg 387  Q
    ||||| ||||||||||||||| || ||||||| || ||||||||||||||||    
T  1489411 tgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccg 1489360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 386
Target Start/End: Complemental strand, 1537882 - 1537767
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    ||||| |||||||||||||||||||||| |||||| || | | |  ||  || || || |||   ||||| ||||||||||||||| || ||||||| ||    
T  1537882 agtaaaagttgcaaaagcccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaa 1537783  T
Q  371 tttcaaagttcattcc 386  Q
     |||||||||||||||    
T  1537782 cttcaaagttcattcc 1537767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 604
Target Start/End: Complemental strand, 1548397 - 1548208
Alignment:
Q  412 gctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagat 511  Q
    ||||||||||| |  ||||||| |||||||||   ||| |||| |||||||||||| || |||||| ||  ||||| | ||||||||||||  |||| ||    
T  1548397 gctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaat 1548301  T
Q  512 tggggaataaggaagataacatttcgaggttttcattacttaaccaacaattgtgaatcaaactgagagacttcagttgaggacttgcaacaa 604  Q
    ||||||| |  ||||| || |||| || | ||||||  ||||| |   |||||||| |||||| ||| ||||| | |||||| ||| ||||||    
T  1548300 tggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttacaacaa 1548208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 12121507 - 12121458
Alignment:
Q  336 tgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattc 385  Q
    ||||| ||||||||||||||| || ||||||| || ||||||||||||||    
T  12121507 tgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 9e-66; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 12102116 - 12102259
Alignment:
Q  119 gagttccctctttttgttgttgaaacgataacgaggtggtacagtgataataccatcgagtcaacaacattatgaagcactttatagcagttcttcagat 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12102116 gagttccctctttttgttgttgaaacgataacgaggtggaacagtgataatatcatcgagtcaacaacattatgaagcactttatagcagttcttcagat 12102215  T
Q  219 tgttctctctcagttgtgtgcagctttctaccacatgatccatg 262  Q
    || |||||||||||||||||||| ||||||||||||||||||||    
T  12102216 tgctctctctcagttgtgtgcagttttctaccacatgatccatg 12102259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 12102274 - 12102361
Alignment:
Q  295 caactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 382  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 336 - 518
Target Start/End: Original strand, 6416015 - 6416194
Alignment:
Q  336 tgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctca 435  Q
    ||||| ||||||||||||||||||||| |||| || | |||||| ||||||    |||   ||| ||  |||  ||||||||||||||| || ||||| |    
T  6416015 tgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatctta 6416114  T
Q  436 caacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattggggaa 518  Q
    |||||| ||||||| |||||||||||||||||   ||||| |  ||  ||| || |||||||||||| ||||| |||||||||    
T  6416115 caacatatctttaaaacttgacaaataccttc---agataagagattacaacgattcaaatcaagcagctgcaaattggggaa 6416194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 275 - 382
Target Start/End: Complemental strand, 11936386 - 11936279
Alignment:
Q  275 acagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttc 374  Q
    |||||||||||||||||| |||||||||||| |||  |||| ||  ||  |  ||||||| ||||  |||||||| ||||||||||||||||| || |||    
T  11936386 acagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttc 11936287  T
Q  375 aaagttca 382  Q
    ||||||||    
T  11936286 aaagttca 11936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 275 - 382
Target Start/End: Complemental strand, 11948366 - 11948259
Alignment:
Q  275 acagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttc 374  Q
    |||||||||||||||||| |||||||||||| |||  |||| ||  ||  |  ||||||| ||||  |||||||| ||||||||||||||||| || |||    
T  11948366 acagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttc 11948267  T
Q  375 aaagttca 382  Q
    ||||||||    
T  11948266 aaagttca 11948259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 467
Target Start/End: Original strand, 6432151 - 6432341
Alignment:
Q  277 agttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaa 376  Q
    ||||||| |||||||| |||| ||||| | |||| |||  ||  ||| | |||||| | ||||| ||||||||||||||||| ||| |||| || |||||    
T  6432151 agttgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaa 6432250  T
Q  377 agttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttc 467  Q
    ||||||||||    |||   ||| ||  ||| ||||||||||||||||   |||  | |||||||||| |||| |||||||||||||||||    
T  6432251 agttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 526
Target Start/End: Original strand, 7119267 - 7119393
Alignment:
Q  397 actcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaat 496  Q
    ||||||| ||||| ||||||||||||||   |||||| | |||||||| |||| |||||||||||||   |||||||||||| || ||||  | ||||||    
T  7119267 actcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaat 7119363  T
Q  497 caagcaactgcagattggggaataaggaag 526  Q
    |||| |  || | ||||||||| |||||||    
T  7119364 caagaagttgtaaattggggaaaaaggaag 7119393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 526
Target Start/End: Original strand, 7131745 - 7131871
Alignment:
Q  397 actcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaat 496  Q
    ||||||| ||||| ||||||||||||||   |||||| | |||||||| |||| |||||||||||||   |||||||||||| || ||||  | ||||||    
T  7131745 actcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaat 7131841  T
Q  497 caagcaactgcagattggggaataaggaag 526  Q
    |||| |  || | ||||||||| |||||||    
T  7131842 caagaagttgtaaattggggaaaaaggaag 7131871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 534
Target Start/End: Complemental strand, 10579725 - 10579591
Alignment:
Q  397 actcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaat 496  Q
    ||||||||||| | |||||||||||||| | |||||| || ||||||   | | |||||| ||||||||||   ||||||||  | ||||  | ||||||    
T  10579725 actcttggacatttggctaagttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttc---agatatgtattcgcaagtattcaaat 10579629  T
Q  497 caagcaactgcagattggggaataaggaagataacatt 534  Q
    |||||| ||||| ||||||||| ||||||| |||||||    
T  10579628 caagcagctgcaaattggggaaaaaggaagctaacatt 10579591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 6589373 - 6589243
Alignment:
Q  336 tgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctca 435  Q
    ||||| |||||||||||||||||||||  ||| || | |||||||||||||    |||   ||| |   |||| ||||||||||||||| |||||||| |    
T  6589373 tgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatctta 6589274  T
Q  436 caacatctctttaagacttgacaaatacctt 466  Q
    ||||||||  | || ||||||||||||||||    
T  6589273 caacatcttctcaatacttgacaaatacctt 6589243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 6402987 - 6403040
Alignment:
Q  414 taagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttc 467  Q
    ||||||||||| |||||| | |||||||||| |||| |||||||||||||||||    
T  6402987 taagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 364
Target Start/End: Original strand, 28935055 - 28935126
Alignment:
Q  293 gacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtt 364  Q
    |||||||||||||||||| |  | || |||| |  ||||||| |||||||||||||||||||||||| ||||    
T  28935055 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagtt 28935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 6423260 - 6423314
Alignment:
Q  330 aactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 384  Q
    ||||| ||||| ||||||||||||||||||||| |||| || || ||||||||||    
T  6423260 aactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 273 - 605
Target Start/End: Complemental strand, 18315386 - 18315054
Alignment:
Q  273 taacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatt 372  Q
    ||||||||||||||||| ||||||||||||||| |||| |||| || |||| | |||||||  |||||||||||||||||||||||||||||||| || |    
T  18315386 taacagttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaact 18315287  T
Q  373 tcaaagttcattccggagagcccaactcttgga-cagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttca 471  Q
    | ||||||||||||    |||   | ||||| | ||  | ||||||||||| |  ||||||||| |||| ||   ||| |||||||||||||||||||||    
T  18315286 ttaaagttcattccacgtagcttcattcttgaatcacga-gctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttca 18315188  T
Q  472 gatatgtcatagcaatgactcaaatcaagcaactgcagattggggaataaggaagataacatttcgaggttttcattacttaaccaacaattgtgaatca 571  Q
    | ||||| || ||| |  ||||||||||||||||||| ||||||||| | |||||| || |||| || | |||| |  ||||||||  |||||  | | |    
T  18315187 ggtatgttatcgcagtagctcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttgatgctttcctctcttaaccatgaattgcaagtaa 18315088  T
Q  572 aactgagagacttcagttgaggacttgcaacaaa 605  Q
    ||| ||||||||| | |||||| |||||| ||||    
T  18315087 aacggagagactttaattgagggcttgcagcaaa 18315054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 196 - 382
Target Start/End: Original strand, 21235445 - 21235653
Alignment:
Q  196 cactttatagcagttcttcagattgttctctctcagttgtgtgcagctttctaccacatgatccatgcctcttttagt---------------------- 273  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||||| || ||||||||||||                          
T  21235445 cactttatagcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgctcaagt 21235544  T
Q  274 aacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaattt 373  Q
    ||||||||||||||||  ||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||    
T  21235545 aacagttgcaaaagcctgcgacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaactt 21235644  T
Q  374 caaagttca 382  Q
    |||||||||    
T  21235645 caaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 273 - 386
Target Start/End: Original strand, 32151287 - 32151400
Alignment:
Q  273 taacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatt 372  Q
    |||||||||||||||||||| |||||||||||| |||| |||| ||  ||| | |||||  | ||||  ||||||||| ||||||||||| ||||||| |    
T  32151287 taacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaact 32151386  T
Q  373 tcaaagttcattcc 386  Q
    || |||||||||||    
T  32151387 tcgaagttcattcc 32151400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 27922503 - 27922605
Alignment:
Q  282 caaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaagttc 381  Q
    ||||||||||| |||||||||||| |||| |||  || |||| | ||||||   ||||| |||||||||||||||||||| ||||| || ||||||||||    
T  27922503 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttc 27922602  T
Q  382 att 384  Q
    |||    
T  27922603 att 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 17636508 - 17636402
Alignment:
Q  279 ttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaag 378  Q
    ||||||||| | | ||||||||||||| |||| |||   | |||| |  ||||||| ||| |||||||||||||||||||||| ||||| || |||||||    
T  17636508 ttgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaag 17636409  T
Q  379 ttcattc 385  Q
    |||||||    
T  17636408 ttcattc 17636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 452 - 508
Target Start/End: Complemental strand, 17643527 - 17643471
Alignment:
Q  452 cttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgca 508  Q
    |||||||||||  |||||||||||||| ||||||||  || ||||||||||||||||    
T  17643527 cttgacaaataggttcttcagatatgttatagcaatctcttaaatcaagcaactgca 17643471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 382
Target Start/End: Complemental strand, 28246404 - 28246299
Alignment:
Q  275 acagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttc 374  Q
    |||||||||||||||| | |||||||||||| |||  |||| ||  ||  ||  |||||| ||||  |||||||| ||||||||||||||||| || |||    
T  28246404 acagttgcaaaagcccgctacaactctttgagatccaatagagtgatttatt--caactcttgtaaatgacaagtccaacacctccagtttgggaacttc 28246307  T
Q  375 aaagttca 382  Q
    ||||||||    
T  28246306 aaagttca 28246299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 515
Target Start/End: Complemental strand, 34936278 - 34936034
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    ||||| ||||||||||||||||||||||||||||  ||   |||| ||  ||  | |||||||| ||||| |||||||| ||||||||| ||||| | ||    
T  34936278 agtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaa 34936179  T
Q  371 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttc 470  Q
      |||||| |||||| |   ||    ||| ||| ||| | ||| |||| |||||  ||||| |||||||||||| |||| || ||| |||||||||  |     
T  34936178 catcaaagatcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaacatgataaataccttgatt 34936079  T
Q  471 agatatgtcatagcaatgactcaaatcaagcaactgcagattggg 515  Q
    ||||||| ||  |||||  |||||||||||||  |||| ||||||    
T  34936078 agatatgccactgcaatcgctcaaatcaagcagatgcaaattggg 34936034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 17628073 - 17628018
Alignment:
Q  327 atcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 382  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||| || ||||||||    
T  17628073 atcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 535
Target Start/End: Original strand, 32151432 - 32151546
Alignment:
Q  418 ttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattgggga 517  Q
    ||||||| |||||||||| | |||||   ||| ||||||||||| |||||||||||||||| || ||||   |||||||||||||  |||| ||| ||||    
T  32151432 ttcaaatgcctaatctcagagcatct---taaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattaggga 32151528  T
Q  518 ataaggaagataacattt 535  Q
    | | |||||  |||||||    
T  32151529 aaatggaagcaaacattt 32151546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 518
Target Start/End: Complemental strand, 17636370 - 17636265
Alignment:
Q  413 ctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagatt 512  Q
    |||||||||||| |||||| | | |||||| | |||| ||||||||||||||||  || ||||| | || |||||  |  |||||||||| ||||| |||    
T  17636370 ctaagttcaaatgcctaatattagaacatccccttaaaacttgacaaatacctttctctgatattttattgcaatctcgtaaatcaagcagctgcaaatt 17636271  T
Q  513 ggggaa 518  Q
    ||||||    
T  17636270 ggggaa 17636265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 271 - 518
Target Start/End: Complemental strand, 51113896 - 51113652
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    |||||||||||||||||||||| ||||||||| || |||| |||| ||  ||| | ||||||   ||||| ||||||||  |||||||||||||||| |     
T  51113896 agtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggag 51113797  T
Q  371 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttc 470  Q
     |||||||||||||||    |||   | | ||| |||||| ||||| ||||||| |||||| | ||||||||||||||| |||||||||||||   ||||    
T  51113796 cttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatac---cttc 51113700  T
Q  471 agatatgtcatagcaatgactcaaatcaagcaactgcagattggggaa 518  Q
     ||||| |||||||||||| | |||||||| | |||||||||||||||    
T  51113699 ggatatctcatagcaatgagttaaatcaagaagctgcagattggggaa 51113652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 279 - 386
Target Start/End: Complemental strand, 51121000 - 51120893
Alignment:
Q  279 ttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaag 378  Q
    ||||||||||||||||||||||||||| || | |||  ||| ||| | |||||||| |||||| ||||||||||||||||||| ||||  || |||||||    
T  51121000 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 51120901  T
Q  379 ttcattcc 386  Q
    ||||||||    
T  51120900 ttcattcc 51120893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 271 - 466
Target Start/End: Complemental strand, 13470847 - 13470652
Alignment:
Q  271 agtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaa 370  Q
    ||||| |||||||||||||||| |||| ||||||| |||| |||| ||  ||  | || |||   ||||| ||||||||||||||||||||| |||| ||    
T  13470847 agtaatagttgcaaaagcccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaa 13470748  T
Q  371 tttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaatacctt 466  Q
       |||||||||||||    |||   ||| ||  ||| |||||||||||||||| |||||||| ||||||| || |||| ||||||||||||||||    
T  13470747 caacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaatacctt 13470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 499
Target Start/End: Complemental strand, 514717 - 514615
Alignment:
Q  397 actcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaat 496  Q
    |||||||  |||| |||||||||||||| |||||||| | | ||||||||||| |||||||| |||| ||  |||||||||| ||  ||||  |||||||    
T  514717 actcttgagcagtgggctaagttcaaatgcctaatcttagaccatctctttaaaacttgacagatacttttgtcagatatgttatcacaatagctcaaat 514618  T
Q  497 caa 499  Q
    |||    
T  514617 caa 514615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 382
Target Start/End: Original strand, 1657239 - 1657346
Alignment:
Q  275 acagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttc 374  Q
    |||||||||||||||| |  ||||||||||| |||  |||| ||  |   || ||||||| ||||  |||||||| ||||||||||||||||| || |||    
T  1657239 acagttgcaaaagcccgctgcaactctttgagatccaatagagtgatatattgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttc 1657338  T
Q  375 aaagttca 382  Q
    ||||||||    
T  1657339 aaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 27005833 - 27005790
Alignment:
Q  325 ttatcaactcatgtatgtgacaagttcaacacctccagtttgga 368  Q
    ||||||| || |||||||||||||||||| ||||||||||||||    
T  27005833 ttatcaattcttgtatgtgacaagttcaagacctccagtttgga 27005790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 418 - 500
Target Start/End: Original strand, 1657378 - 1657460
Alignment:
Q  418 ttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaag 500  Q
    |||||||  ||||| | ||||||| || |||| || |||  ||||||||||||||||||||| | |||||| |||||||||||    
T  1657378 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaag 1657460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 33714899 - 33714861
Alignment:
Q  342 tgacaagttcaacacctccagtttggaaatttcaaagtt 380  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  33714899 tgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 338 - 520
Target Start/End: Original strand, 492 - 674
Alignment:
Q  338 tatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcaca 437  Q
    |||||||||||||||||  ||||||||| |||| |||||||||||||  |   ||||  ||||||| | | |||||||||||||| || ||||| |||||    
T  492 tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcaca 591  T
Q  438 acatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattggggaata 520  Q
    ||||||  |||| | ||| |||||| |||||||||| || |||  | |||||||||||||||| | ||||| ||| |||||||    
T  592 acatctacttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaata 674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 274 - 518
Target Start/End: Complemental strand, 1037776 - 1037532
Alignment:
Q  274 aacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaattt 373  Q
    |||||||| |||||||||| |||| ||||||| |||| |||| ||  ||| | |||||| ||||||||||||||||| |||||||| | ||  | || ||    
T  1037776 aacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactt 1037677  T
Q  374 caaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcaga 473  Q
     |||||| ||||     ||    ||||||| | |||||||||| |||||||  |||| || |||||||||| |||| |||| ||||||||||||||||||    
T  1037676 taaagtttattctaagtagtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcaga 1037577  T
Q  474 tatgtcatagcaatgactcaaatcaagcaactgcagattggggaa 518  Q
    ||||| || |||    ||||||||||| || |||| |||||||||    
T  1037576 tatgttatggcaggagctcaaatcaagaaattgcaaattggggaa 1037532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 272 - 500
Target Start/End: Complemental strand, 32785886 - 32785661
Alignment:
Q  272 gtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaat 371  Q
    ||||||||| |||||||||| || ||||  |||| |||| |||  || |||| | ||||| || |||||||||||||||||||||||| ||||||| |      
T  32785886 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagc 32785787  T
Q  372 ttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttca 471  Q
    || |||||||||||    | || | | ||||| | ||| | | || |||||||  ||||||| | ||||||   |||| | |||||||||||||||||||    
T  32785786 tttaaagttcattcgacggtgctcgattcttgaaaagtggtccaaattcaaatgtctaatcttagaacatc---ttaaaaattgacaaataccttcttca 32785690  T
Q  472 gatatgtcatagcaatgactcaaatcaag 500  Q
    ||||||| ||||||||  |||||||||||    
T  32785689 gatatgttatagcaatagctcaaatcaag 32785661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 45245194 - 45245085
Alignment:
Q  277 agttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaa 376  Q
    ||||||||||||||||||||||||||||| |||| || | ||  ||| | ||||||   ||| | |||||| ||||||||||| ||||| | || |||||    
T  45245194 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaa 45245095  T
Q  377 agttcattcc 386  Q
    |||| |||||    
T  45245094 agtttattcc 45245085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 32267470 - 32267572
Alignment:
Q  282 caaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaagttc 381  Q
    ||||||||||| |||||||||||| |||| |||  || |||| | |||||||  ||| |||||||||||||| ||||||| ||||| || ||||||||||    
T  32267470 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttc 32267569  T
Q  382 att 384  Q
    |||    
T  32267570 att 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 41901639 - 41901542
Alignment:
Q  282 caaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttggaaatttcaaagt 379  Q
    |||||| |||| |||||||||||| |||| |||  || |||| | |||||||  ||||| |||||||||||||||||||||||||| || ||||||||    
T  41901639 caaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 28525142 - 28525187
Alignment:
Q  418 ttcaaatccctaatctcacaacatctctttaagacttgacaaatac 463  Q
    ||||||||||| |||| |||||||||| |||| |||||||||||||    
T  28525142 ttcaaatccctcatcttacaacatctccttaaaacttgacaaatac 28525187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 518
Target Start/End: Original strand, 9581198 - 9581299
Alignment:
Q  417 gttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattgggg 516  Q
    ||||||||  ||||||| ||||||||| ||||| |||||||||||||||  || |||||||| | ||||||| | || |||||||| ||||| |||||||    
T  9581198 gttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgggg 9581297  T
Q  517 aa 518  Q
    ||    
T  9581298 aa 9581299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 417 - 518
Target Start/End: Original strand, 9586766 - 9586867
Alignment:
Q  417 gttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcagattgggg 516  Q
    ||||||||  ||||||| ||||||||| | ||| |||||||||||||||  || |||||||| | ||||||| | || |||||||| ||||| |||||||    
T  9586766 gttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaattgggg 9586865  T
Q  517 aa 518  Q
    ||    
T  9586866 aa 9586867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 7554467 - 7554554
Alignment:
Q  266 cttttagtaacagttgcaaaagcccacgacaactctttgaaatcagatagcgttcttcgttatcaactcatgtatgtgacaagttcaa 353  Q
    |||| ||||||||||| ||||| |||| |||||||||||| |||| |||| || |||| | |||||| | ||||| ||| ||||||||    
T  7554467 ctttcagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 52082636 - 52082678
Alignment:
Q  342 tgacaagttcaacacctccagtttggaaatttcaaagttcatt 384  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  52082636 tgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 467
Target Start/End: Original strand, 10614715 - 10614773
Alignment:
Q  409 taggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttc 467  Q
    |||||||||||||||| |||||||| ||||||| || |||| |||||||||||||||||    
T  10614715 taggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttc 10614773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 410 - 484
Target Start/End: Original strand, 7977701 - 7977775
Alignment:
Q  410 aggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgtcatagc 484  Q
    |||||| ||| ||||  ||||| | |||||||||| |||| ||||||| ||||||||||||||| ||| ||||||    
T  7977701 aggctaggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcagaaatgccatagc 7977775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 397 - 478
Target Start/End: Complemental strand, 613 - 532
Alignment:
Q  397 actcttggacagtaggctaagttcaaatccctaatctcacaacatctctttaagacttgacaaataccttcttcagatatgt 478  Q
    ||||||| |||||||||||| |||||||  |||  || |||||||||| |||  |||| |||||||||||||||||||||||    
T  613 actcttgaacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatgt 532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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