View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_low_4 (Length: 562)
Name: NF2996_low_4
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 15 - 544
Target Start/End: Complemental strand, 45440948 - 45440415
Alignment:
| Q |
15 |
gaggggaagtttctttgtcatttat----aactagccatggatattgattttcattcatttttattgtcttccttcatcaagagtacaaagcaatttgag |
110 |
Q |
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| T |
45440948 |
gaggggaagtttctttgtcatttatttatagctagccatggatattgattttcattaatttttattgtcttccttcatcaagagtacaaagcaatttgag |
45440849 |
T |
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| Q |
111 |
cttgactatagagataaaggaaggccaggacttggaatccagagatccgtgaaaaactttcagctcactttagaggtatcatcattgaagccgggagtgt |
210 |
Q |
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| T |
45440848 |
cttgactatagagataaaggaaggccaggacttggaatccagagatccgtgaaaaactttcagctcactttagaggtatcatcattgaagccgggagtgt |
45440749 |
T |
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| Q |
211 |
tttttatgttataataacgcagttagttatgttctctacttagcttatttgtgtttgctatgattaggagaatgggaagcagacaatcctgcagctaggg |
310 |
Q |
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| T |
45440748 |
tttttatgttataataacgcagttagttatgttgtctacttagctgatttgtgtttgctatgattaggagaatgggaagcagacaatcctgcagctaggg |
45440649 |
T |
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| Q |
311 |
agggtaggaaaatctaattttgttatggactacaggtatcaattcaaaattttcttgttttattgaccttaatgttttttgacgatgcggggtttcatag |
410 |
Q |
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| T |
45440648 |
agggtaggaaaatctaattttgttatggactacaggtatcaattcaaaattttcttgttttattgaccttaatgttttttgaggatgcggggtttcatag |
45440549 |
T |
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| Q |
411 |
ctagtaccatttcctctgtcaatctgcagatatcctttgactggttaccaggcgttttgcatatgtttggcttccattgatgcaaagctttgttgcatag |
510 |
Q |
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| T |
45440548 |
ctagtaccatttcctctgtcaatctgcagatatcctttgactggttaccaggcgttttgcatatgtttggcttccattgatgcaaagctttgttgcatag |
45440449 |
T |
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| Q |
511 |
tgtagcggcaaatctctctgttcccaccattggt |
544 |
Q |
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| T |
45440448 |
tgtagcggcaaatctctctgttcccaccattggt |
45440415 |
T |
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