View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2996_low_5 (Length: 507)
Name: NF2996_low_5
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2996_low_5 |
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| [»] scaffold0365 (2 HSPs) |
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Alignment Details
Target: scaffold0365 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 489
Target Start/End: Complemental strand, 2312 - 1833
Alignment:
| Q |
14 |
agatagcaagattaacataggaattggagtatgctgagtggaataggccacaaagagacacggagtatggagatttccaaagatggagaatgcggaaaat |
113 |
Q |
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| T |
2312 |
agatagcaagattaacataggaattggagtatgctgagtggaataggccacaaagagacacggagtatggagatttccaaagatggagaatgcggaaaat |
2213 |
T |
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| Q |
114 |
atcaataaggtgttcaaggaaagttccatgtttgtgccaacattcggatgcaccaaccgaacggaggattgtgattagggaagggaggttggcgtcaatg |
213 |
Q |
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| T |
2212 |
atcaataaggtgttcaaggaaagttccatgtttgtgccaacattcagatgcaccaacagaacggaggattgtgattagggaagggagtttgggatcgatg |
2113 |
T |
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| Q |
214 |
gaattgagctcgttacggaggaagggtttagctgaggttaagagggtttggaggtattcacttgaacttgat------gaagaagaatttgacatggtta |
307 |
Q |
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| T |
2112 |
gaaatgagctcgttacgaaggaagggtttagctgaggttaagagggtttcgaggtattcacttgaacttgatgaataagaagaagaatttgacatggtta |
2013 |
T |
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| Q |
308 |
ttaattcgttaacgagttggtgaatgattttggaagactactctatttaacgagaaacaacgaggattggtctagcagaaggagttagactcttaaaaca |
407 |
Q |
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| T |
2012 |
ttaattcgttaacgagttggtgaatgattttggaagacta--ctatttaacgagaaacaacgaggattggtctagcagaaggagttagactcttaaaaca |
1915 |
T |
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| Q |
408 |
tggcgatctaaggatcaaaacatggttgaagtgttcaaatttgagacgtctaaatagaattaccaggaacctatgagaaaca |
489 |
Q |
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| T |
1914 |
tggcgatctaaggattaaaacatggttgaagtgttcaaatttgagacgtctaaatagaattaccaggaacctatgagaaaca |
1833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 17341 - 17291
Alignment:
| Q |
155 |
attcggatgcaccaaccgaacggaggattgtgattagggaagggaggttgg |
205 |
Q |
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| T |
17341 |
attcggatgcacctacggaacggaggactgtgattcgggaagggaggttgg |
17291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 14492743 - 14492793
Alignment:
| Q |
155 |
attcggatgcaccaaccgaacggaggattgtgattagggaagggaggttgg |
205 |
Q |
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| T |
14492743 |
attcggatgcacctacggaacggaggactgtgattcgggaagggaggttgg |
14492793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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