View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2996_low_8 (Length: 441)

Name: NF2996_low_8
Description: NF2996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2996_low_8
NF2996_low_8
[»] chr4 (1 HSPs)
chr4 (92-428)||(7285615-7285955)
[»] chr6 (2 HSPs)
chr6 (272-330)||(13308824-13308882)
chr6 (272-330)||(14592687-14592745)
[»] chr3 (2 HSPs)
chr3 (272-330)||(13786886-13786944)
chr3 (274-351)||(22599021-22599100)
[»] chr7 (2 HSPs)
chr7 (242-351)||(22348450-22348561)
chr7 (272-330)||(21281390-21281449)
[»] chr5 (1 HSPs)
chr5 (274-351)||(6837344-6837424)
[»] chr1 (1 HSPs)
chr1 (274-351)||(16001375-16001454)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 92 - 428
Target Start/End: Complemental strand, 7285955 - 7285615
Alignment:
Q  92 catgaacaatactaattaataatcatggacataccgattaatatgcaactatttaaccagaagtttacaatcatgttgtatcaacattaaaacaagtcta 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7285955 catgaacaatactaattaataatcatggacataccgattaatatgcaactatttaaccagaagtttacaatcatgttgtatcaacattaaaacaagtcta 7285856  T
Q  192 acatcaccatggagccaagcaaagcaatcaagtttcatttcaaatcatattcaaaaaccagaagcatgtgtggtgcagtatgagtcatatttgactccaa 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7285855 acatcaccatggagccaagcaaagcaatcaagtttcatttcaaatcatattcaaaaaccagaagcatgtgtggtgcagtatgagtcatatttgactccaa 7285756  T
Q  292 aatattcaaaaaagtcattcctgcatgatataaaattacattaaataaatatatatacatttggtatgaaatagt----nnnnnnnnnnggtgtaattta 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||    
T  7285755 aatattcaaaaaagtcattcctgcatgatataaaattacattaaataaatatatatacatttggtatgaaatagtaaaaaaaaaaaaaaagtgtaattta 7285656  T
Q  388 taccaataaatggaattaaacagaagactcgggtgttggtg 428  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  7285655 taccaataaatggaattaaatagaagactcgggtgttggtg 7285615  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 13308882 - 13308824
Alignment:
Q  272 tgagtcatatttgactccaaaatattcaaaaaagtcattcctgcatgatataaaattac 330  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  13308882 tgagtcatatttgactccaaaatatccaaaaaagtcattcctgcatgacattaaattac 13308824  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 14592687 - 14592745
Alignment:
Q  272 tgagtcatatttgactccaaaatattcaaaaaagtcattcctgcatgatataaaattac 330  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||| || |||||||    
T  14592687 tgagtcatatttgactccaaaatatcaaaaaaagtcattcttgcatgacattaaattac 14592745  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 13786944 - 13786886
Alignment:
Q  272 tgagtcatatttgactccaaaatattcaaaaaagtcattcctgcatgatataaaattac 330  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  13786944 tgagtcatatttgactccaaaatatccaaaaaagtcattcctgcatgacattaaattac 13786886  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 22599100 - 22599021
Alignment:
Q  274 agtcatatttgactccaaaatattc--aaaaaagtcattcctgcatgatataaaattacattaaataaatatatatacat 351  Q
    ||||| |||||||| |||||||| |  |||||||||| |||||||  |  |||||||||| |||||||||||||||||||    
T  22599100 agtcacatttgacttcaaaatatcccaaaaaaagtcactcctgcagtacgtaaaattacactaaataaatatatatacat 22599021  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 22348561 - 22348450
Alignment:
Q  242 tcaaaaaccagaagcatgtgtggtgcagtatgagtcatatttgactccaaaatattc--aaaaaagtcattcctgcatgatataaaattacattaaataa 339  Q
    |||||||||| |  ||||||| ||| ||||  || || ||||||||||||||||| |  |||||||||| |||| ||  | ||||||||||| |||||||    
T  22348561 tcaaaaaccatagacatgtgttgtgtagtacaaggcacatttgactccaaaatatcccaaaaaaagtcactcctacagtacataaaattacactaaataa 22348462  T
Q  340 atatatatacat 351  Q
    ||||||||||||    
T  22348461 atatatatacat 22348450  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 21281390 - 21281449
Alignment:
Q  272 tgagtcatatttgactccaaaatattc-aaaaaagtcattcctgcatgatataaaattac 330  Q
    ||||||||||||||||||||||||| | |||||||| |||| ||||||| || |||||||    
T  21281390 tgagtcatatttgactccaaaatatccaaaaaaagtaattcatgcatgacattaaattac 21281449  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 351
Target Start/End: Original strand, 6837344 - 6837424
Alignment:
Q  274 agtcatatttgactccaaaatattc---aaaaaagtcattcctgcatgatataaaattacattaaataaatatatatacat 351  Q
    ||||| |||||||| |||||||| |   |||||||||| |||||||  | ||||||||||| |||||||||||||||||||    
T  6837344 agtcacatttgacttcaaaatatcccaaaaaaaagtcactcctgcagtacataaaattacactaaataaatatatatacat 6837424  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 16001454 - 16001375
Alignment:
Q  274 agtcatatttgactccaaaatattcaaa--aaagtcattcctgcatgatataaaattacattaaataaatatatatacat 351  Q
    ||||| ||||||||||||||||| | ||  ||||||| |||||||  | ||||||||||| |||||||||||| ||||||    
T  16001454 agtcacatttgactccaaaatatcccaagaaaagtcactcctgcagtacataaaattacactaaataaatatacatacat 16001375  T

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