View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2997_low_1 (Length: 968)

Name: NF2997_low_1
Description: NF2997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2997_low_1
NF2997_low_1
[»] chr8 (4 HSPs)
chr8 (597-959)||(3498423-3498785)
chr8 (18-98)||(3497786-3497866)
chr8 (161-319)||(3497928-3498097)
chr8 (321-414)||(3498140-3498234)
[»] chr6 (4 HSPs)
chr6 (851-911)||(7054704-7054764)
chr6 (770-846)||(22957791-22957868)
chr6 (770-846)||(23830524-23830601)
chr6 (861-910)||(15121353-15121402)
[»] chr7 (2 HSPs)
chr7 (851-911)||(29675975-29676037)
chr7 (867-902)||(32517389-32517424)
[»] chr3 (1 HSPs)
chr3 (851-912)||(53944675-53944736)
[»] chr2 (2 HSPs)
chr2 (813-850)||(663103-663140)
chr2 (869-902)||(40113677-40113710)
[»] chr1 (1 HSPs)
chr1 (813-854)||(9764746-9764788)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 597 - 959
Target Start/End: Original strand, 3498423 - 3498785
Alignment:
Q  597 tgctactgatgttcagtattaatgcaannnnnnncgggaatgatcggtcatcctacaaatgccgcattaggaccgagatgaatgttgtgtataaatcgat 696  Q
    ||||| |||||||||||||||||||||       ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  3498423 tgctattgatgttcagtattaatgcaatttttttcgggaatgatcggtcattctataaatgccgcattaggaccaagatgaatgttgtgtataaatcgat 3498522  T
Q  697 tcaattattctttatataaagagaaccacaaacacaatttctacataaagaatctaatacgtgaatcgatttagatttagacacaaattcttatccaacc 796  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3498523 tcaattattatttatataaagagaacgacaaacacaatttttacataaagaatctaatacgtgaatcgatttagatttagacacaaattcttatccaacc 3498622  T
Q  797 aaaatagggttcatac-tgatagccataattgtatctatttggctctgataccaattgaagaatctaatactcagccatagatcaatagatacaagttat 895  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3498623 aaaatagggttcatacgtgatagccataattgtatctatttggctctgataccaattgaagaatctaatactcaaccatagatcaatagatacaagttat 3498722  T
Q  896 agcatataattagtagcnnnnnnntaaataataaattgtgtaccttatataattggttgatgat 959  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  3498723 agcatataattagtag-aaaaaaagaaataataaattgtgtaccttatataattggttgatgat 3498785  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 3497786 - 3497866
Alignment:
Q  18 agttctatggctaaaatctcagagtgagggagaagttagtttccagaatcgagggtttagtagatgcttctagatactgga 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3497786 agttctatggctaaaatctcagagtgagggagaagttagtttccagaatcgagggtttagtagatgcttctagatactgga 3497866  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 161 - 319
Target Start/End: Original strand, 3497928 - 3498097
Alignment:
Q  161 gagtaaataggaccaaatctaccatacnnnnnnncctgccctaacaggaaatgcaaattcgaaatctacctagttgaaacaaaaattccaaatataccat 260  Q
    ||||||| |||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||    
T  3497928 gagtaaacaggaccaaatctaccatactttttttcctgccctaacaggaaatgcaaatttgaaatctacctagttgaaattaaaattccaaatctaccat 3498027  T
Q  261 a-----------cggaccccatatcacaagtttgatctacgacctacccctatgtcataagtccaacttg 319  Q
    |           | ||||| |||||||||||||||| | ||||||| ||||||||| |||||||||||||    
T  3498028 acttttgatcagctgaccctatatcacaagtttgatttgcgacctaaccctatgtcgtaagtccaacttg 3498097  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 321 - 414
Target Start/End: Original strand, 3498140 - 3498234
Alignment:
Q  321 tatgtctcaatcccttcttgcgacatacacttctttctcaaattttgaannnnnnnngtcttta-ttatatgtcacaaatgggacttgtgacatg 414  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||        | ||||| ||||||||||||||||||||||||||||||    
T  3498140 tatgtctcaattccttcttgcgacatacacttctttctcaaattttgaatttattttgcctttatttatatgtcacaaatgggacttgtgacatg 3498234  T

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Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 851 - 911
Target Start/End: Original strand, 7054704 - 7054764
Alignment:
Q  851 ttgaagaatctaatactcagccatagatcaatagatacaagttatagcatataattagtag 911  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  7054704 ttgaagaatctaatactcagtcatagatgaatagatacaaattatagcatataattagtag 7054764  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 846
Target Start/End: Original strand, 22957791 - 22957868
Alignment:
Q  770 gatttagacacaaattcttatccaaccaaaatagggttcatac-tgatagccataattgtatctatttggctctgata 846  Q
    |||||| || || ||||| || |||||||||||||||| | || ||||| |||||||||||||||||||||| |||||    
T  22957791 gatttatactcagattctgattcaaccaaaatagggtttaaacatgataaccataattgtatctatttggctatgata 22957868  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 846
Target Start/End: Complemental strand, 23830601 - 23830524
Alignment:
Q  770 gatttagacacaaattcttatccaaccaaaatagggttcatac-tgatagccataattgtatctatttggctctgata 846  Q
    |||||| || || ||||| || |||||||||||||||| | || ||||| |||||||||||||||||||||| |||||    
T  23830601 gatttatactcagattctgattcaaccaaaatagggtttaaacatgataaccataattgtatctatttggctatgata 23830524  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 861 - 910
Target Start/End: Original strand, 15121353 - 15121402
Alignment:
Q  861 taatactcagccatagatcaatagatacaagttatagcatataattagta 910  Q
    |||||||||| ||||||| ||||||||||| ||||| ||| |||||||||    
T  15121353 taatactcagtcatagataaatagatacaaattataacatgtaattagta 15121402  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 851 - 911
Target Start/End: Original strand, 29675975 - 29676037
Alignment:
Q  851 ttgaagaatctaatactcagccatagatc--aatagatacaagttatagcatataattagtag 911  Q
    ||||||||||||||||| || ||||||||  ||||||||||| ||||||||||||||||||||    
T  29675975 ttgaagaatctaatacttagtcatagatctcaatagatacaaattatagcatataattagtag 29676037  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 867 - 902
Target Start/End: Complemental strand, 32517424 - 32517389
Alignment:
Q  867 tcagccatagatcaatagatacaagttatagcatat 902  Q
    |||||||| |||||||||||||||||||||||||||    
T  32517424 tcagccatggatcaatagatacaagttatagcatat 32517389  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 851 - 912
Target Start/End: Original strand, 53944675 - 53944736
Alignment:
Q  851 ttgaagaatctaatactcagccatagatcaatagatacaagttatagcatataattagtagc 912  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||| |||| ||||||||||    
T  53944675 ttgaagaatctaatgctcagccatagatcaatatatacaaatcataacatagaattagtagc 53944736  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 850
Target Start/End: Complemental strand, 663140 - 663103
Alignment:
Q  813 tgatagccataattgtatctatttggctctgataccaa 850  Q
    |||||||||||| |||||||||||||||||||||||||    
T  663140 tgatagccataaatgtatctatttggctctgataccaa 663103  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 869 - 902
Target Start/End: Complemental strand, 40113710 - 40113677
Alignment:
Q  869 agccatagatcaatagatacaagttatagcatat 902  Q
    ||||||| ||||||||||||||||||||||||||    
T  40113710 agccataaatcaatagatacaagttatagcatat 40113677  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 813 - 854
Target Start/End: Original strand, 9764746 - 9764788
Alignment:
Q  813 tgatagccataa-ttgtatctatttggctctgataccaattga 854  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  9764746 tgatagccataaattgtatctaattggctctgataccaattga 9764788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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