View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2997_low_3 (Length: 311)

Name: NF2997_low_3
Description: NF2997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2997_low_3
NF2997_low_3
[»] chr3 (2 HSPs)
chr3 (1-287)||(49201476-49201762)
chr3 (1-137)||(49206587-49206725)
[»] scaffold0102 (1 HSPs)
scaffold0102 (154-192)||(14371-14410)
[»] chr8 (1 HSPs)
chr8 (154-192)||(35049084-35049123)
[»] chr5 (5 HSPs)
chr5 (154-192)||(5708173-5708212)
chr5 (154-192)||(8933893-8933932)
chr5 (154-192)||(9821439-9821478)
chr5 (154-192)||(14196578-14196617)
chr5 (157-186)||(19967118-19967147)
[»] chr2 (2 HSPs)
chr2 (154-192)||(5375600-5375639)
chr2 (154-183)||(43323771-43323800)
[»] chr1 (2 HSPs)
chr1 (154-192)||(25275142-25275181)
chr1 (18-77)||(37029859-37029918)
[»] chr7 (1 HSPs)
chr7 (154-183)||(18264571-18264600)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 49201762 - 49201476
Alignment:
Q  1 tgtgtttgattcaccagtcttttattagttttaggttcaaactattatgttatatgacaatttaatttacatttttacatgcatggtannnnnnngaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  49201762 tgtgtttgattcaccagtcttttattagttttaggttcaaactattatgttatatgacaatttaatttacatttttacatgcatggtatttttttgaatg 49201663  T
Q  101 cacttttggtgtttaaaacaaaactcttgacagggactaacatcaatgatatgatccatccaatccatccatcaaacaaaaaatttgttaatatgatcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201662 cacttttggtgtttaaaacaaaactcttgacagggactaacatcaatgatatgatccatccaatccatccatcaaacaaaaaatttgttaatatgatcca 49201563  T
Q  201 tgagatccatatgattacatcacattgtggttattttattgatagcatgcataattcatgaaataacaagagttcttacttgttctc 287  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201562 tgagatccatatgattacatcacattgtggttattatattgatagcatgcataattcatgaaataacaagagttcttacttgttctc 49201476  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 49206725 - 49206587
Alignment:
Q  1 tgtgtttgattcaccagtcttttattagttttaggttcaa---actattatgttatatgacaatttaatttacatttttacatgcatggtannnnnnnga 97  Q
    ||||||| ||||||||||||||||||||||||||||||||   |||| ||||| ||||||  ||||| ||||||||||||||||| |||||       ||    
T  49206725 tgtgttttattcaccagtcttttattagttttaggttcaaactactactatgtcatatgatgatttagtttacatttttacatgcttggta-ttttttga 49206627  T
Q  98 atgcacttttggtgtttaaaacaaaactcttgacagggac 137  Q
    ||| | |||||| |||||||||||||||  ||||||||||    
T  49206626 atggaattttggcgtttaaaacaaaacttctgacagggac 49206587  T

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Target: scaffold0102 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 14410 - 14371
Alignment:
Q  154 atccatccaatccatccatcaaacaa-aaaatttgttaat 192  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  14410 atccatccaatccatccatcaaacaaaaaaatttgttaat 14371  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 35049123 - 35049084
Alignment:
Q  154 atccatccaatccatccatcaaacaa-aaaatttgttaat 192  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  35049123 atccatccaatccatccatcaaacaaaaaaatttgttaat 35049084  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 5708173 - 5708212
Alignment:
Q  154 atccatccaatccatccatcaaac-aaaaaatttgttaat 192  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5708173 atccatccaatccatccatcaaacaaaaaaatttgttaat 5708212  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 8933932 - 8933893
Alignment:
Q  154 atccatccaatccatccatcaaacaa-aaaatttgttaat 192  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  8933932 atccatccaatccatccatcaaacaaaaaaatttgttaat 8933893  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 9821439 - 9821478
Alignment:
Q  154 atccatccaatccatccatcaaacaaaa-aatttgttaat 192  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  9821439 atccatccaatccatccatcaaacaaaataatttgttaat 9821478  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 14196578 - 14196617
Alignment:
Q  154 atccatccaatccatccatcaaacaaaaa-atttgttaat 192  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  14196578 atccatccaatccatccatcaaacaaaaatatttgttaat 14196617  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 19967147 - 19967118
Alignment:
Q  157 catccaatccatccatcaaacaaaaaattt 186  Q
    ||||||||||||||||||||||||||||||    
T  19967147 catccaatccatccatcaaacaaaaaattt 19967118  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 5375600 - 5375639
Alignment:
Q  154 atccatccaatccatccatcaaac-aaaaaatttgttaat 192  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5375600 atccatccaatccatccatcaaacaaaaaaatttgttaat 5375639  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 43323771 - 43323800
Alignment:
Q  154 atccatccaatccatccatcaaacaaaaaa 183  Q
    ||||||||||||||||||||||||||||||    
T  43323771 atccatccaatccatccatcaaacaaaaaa 43323800  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 25275142 - 25275181
Alignment:
Q  154 atccatccaatccatccatcaaac-aaaaaatttgttaat 192  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  25275142 atccatccaatccatccatcaaacaaaaaaatttgttaat 25275181  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 37029918 - 37029859
Alignment:
Q  18 tcttttattagttttaggttcaaactattatgttatatgacaatttaatttacattttta 77  Q
    ||||||||||||||| |||| ||||| |||| | ||||||  ||||||||||||||||||    
T  37029918 tcttttattagttttgggtttaaactcttatatcatatgatgatttaatttacattttta 37029859  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 18264600 - 18264571
Alignment:
Q  154 atccatccaatccatccatcaaacaaaaaa 183  Q
    ||||||||||||||||||||||||||||||    
T  18264600 atccatccaatccatccatcaaacaaaaaa 18264571  T

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