View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2997_low_4 (Length: 304)
Name: NF2997_low_4
Description: NF2997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2997_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 29009117 - 29008847
Alignment:
| Q |
18 |
tcattttattcaaattcaccttcacatttctatataatttgcatttgcacgctactattttcactgaaactaattcttcaatttcatttgacactgttac |
117 |
Q |
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| T |
29009117 |
tcattttattcaaattcaccttcacatttctatataatttgcatttgcacgctacaattttcactgaaactaattcttcaattgcatttgatactgttac |
29009018 |
T |
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| Q |
118 |
ggtgttatattcattcaattagatgaagaatttgaatcgaagctatagttaactctgtgnnnnnnnnnnnnnnnnnnnnnnnntaggaaaatgaggccag |
217 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29009017 |
ggtgttgtattcattcgattagatgaagaatttgaatcgaagctatagttaactctgtgtttttgattttttggtttgatttgtaggaaaatgaggccag |
29008918 |
T |
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| Q |
218 |
tctgggcagtgaaagctatgttcgtggtcgtcttggcttcaattctcttccgttgcgtttgtggtggtaac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29008917 |
tctgggcagtgaaagctatgttcgtggtcgtcttggcttcgattctcttccgttgcgtttgtggtggtaac |
29008847 |
T |
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