View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2997_low_5 (Length: 234)
Name: NF2997_low_5
Description: NF2997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2997_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 6989170 - 6989379
Alignment:
| Q |
5 |
tgaggaggagcacagacttggggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaattcagttcttcgttaagtttgaa |
104 |
Q |
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| T |
6989170 |
tgaggaggaagacagacttggggcctcagtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaattcagttctttgttaagtta-aa |
6989268 |
T |
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| Q |
105 |
cggtagtaacttttaattgatatttgtgacttgatttcatatttttaaaagcagtcctttttcactatctgcatgttacccttagttttctcgtttatgt |
204 |
Q |
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| T |
6989269 |
cggtagtaacttttaattgatatttgtgacttgctttcatatttttaaaagcagtcctttttcactatctgcatgttacccttagttttctcgtttatgt |
6989368 |
T |
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| Q |
205 |
taagtgctgaa |
215 |
Q |
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||||||||||| |
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| T |
6989369 |
taagtgctgaa |
6989379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 31895898 - 31895842
Alignment:
| Q |
26 |
ggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaat |
82 |
Q |
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| T |
31895898 |
ggcctcggtagaaaatcaacttcggaaggagatgactgtgtatgaggtacatgaaat |
31895842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 31958877 - 31958821
Alignment:
| Q |
26 |
ggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaat |
82 |
Q |
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| T |
31958877 |
ggcctcggtagaaaatcaacttcggaaggagatgactgtgtatgaggtacatgaaat |
31958821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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