View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2998_high_1 (Length: 471)
Name: NF2998_high_1
Description: NF2998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2998_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 6 - 471
Target Start/End: Original strand, 52860326 - 52860791
Alignment:
| Q |
6 |
agcagcacagatcaactcatctcattccgaaatccaagccttaacaatcttcaaactaaaccttcttgacccactcaatgccttaacaacttgggatcca |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860326 |
agcaacacaaatcaactcatctcattccgaaatccaagccttaacaatcttcaaactaaaccttcttgacccactcaatgccttaacaacttgggatcca |
52860425 |
T |
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| Q |
106 |
tcaacaccttcagcaccatgtgattggcatggcattctctgttacaacaacaataacagagttcacactatacgtttacctcgtcttcaactcactggtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860426 |
tcaacaccttcagcaccatgtgattggcatggcattctctgttacaacaacaataacagagttcacactatacgtttacctcgtcttcaactcactggtt |
52860525 |
T |
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| Q |
206 |
caatatcttcatcactctctaatctctcacagcttcgtaaacttagtctccattccaacaaccttaactcatcaataccttcttctctttctcattgtct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860526 |
caatatcttcatcactctctaatctctcacagcttcgtaaacttagtctccattccaacaaccttaactcatcaataccttcttctctttctcattgtct |
52860625 |
T |
|
| Q |
306 |
cttcctacgtgctgtttatcttcacaacaactctctctctggttatctcccttcttcacttctcaccctcaccaaccttcaaattctcaaccttgctcgt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52860626 |
cttcctacgtgctgtttatcttcacaacaactctctctctggttatctccctccttcacttctcaccctcaccaatcttcaaattctcaaccttgctcgt |
52860725 |
T |
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| Q |
406 |
aactttctctctggtacaataccaaataatctctctaactccctaaggtttcttgatctttcttct |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860726 |
aactttctctctggtacaataccaaataatctctctaactccctaaggtttcttgatctttcttct |
52860791 |
T |
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