View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2998_high_5 (Length: 250)
Name: NF2998_high_5
Description: NF2998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2998_high_5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 8337986 - 8338224
Alignment:
| Q |
13 |
aaaatgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaa |
112 |
Q |
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| T |
8337986 |
aaaatgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaa |
8338085 |
T |
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| Q |
113 |
tggtaactaataaagttacattacacaattggtccaaactaatggtaagttagtt-nnnnnnnnnttatttagacaacttttacccattaatgaaggacg |
211 |
Q |
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| T |
8338086 |
tggtaactaataaagttacattacacaattggtccaaactaatggtaagttagttaaaaaaaaaattatttagacaacttttatccattaatgaaggacg |
8338185 |
T |
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| Q |
212 |
tggcagaaaaatagcttagggcataagtgggttttccac |
250 |
Q |
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| T |
8338186 |
tggcagaaaaagagcctagggcataagtgggttttccac |
8338224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 10235266 - 10235505
Alignment:
| Q |
13 |
aaaatgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccagttaaagttagatatatcagtgttaagtttgaactaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
10235266 |
aaaatgtgtattgatatattttcccaccaaatagttgtcaataaagttcagttgttgtaaccaattaaagttagatatat-agtgttaagtttgaactaa |
10235364 |
T |
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| Q |
113 |
tggtaactaataaagttacattacacaattggtccaaactaatggtaagttagtt---nnnnnnnnnttatttagacaacttttacccattaatgaagga |
209 |
Q |
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| T |
10235365 |
tggtaactaataaagttacattacacaattggtccaaactaatggtaagttagttaaaaaaaaaaaaaaatttagacaacttttacccattaatgaagga |
10235464 |
T |
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| Q |
210 |
cgtggcagaaaaatagcttagggcataagtgggttttccac |
250 |
Q |
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| T |
10235465 |
cgtggcagaaaaagagcttagggcataagtgggttttccac |
10235505 |
T |
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