View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2998_low_4 (Length: 341)
Name: NF2998_low_4
Description: NF2998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2998_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 35972694 - 35973015
Alignment:
| Q |
3 |
agagctgaatatttatataggaagaatatacataaaagtgattatgattagataatattattgttatgaacaggtggacttgatgtgtatgctgcgtttt |
102 |
Q |
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| T |
35972694 |
agagctgaatatttatataggaagaatatacataaaagtgattatgattagataatattattgttatgaacaggtggacttgatatgtatgctgcgtttt |
35972793 |
T |
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| Q |
103 |
cttcctctatcaaagaaaatcaagcagcgcaatcaactcttgaatcagacattgttaaatacaagcagatactcaacatcgaaggtttgtttcttcatct |
202 |
Q |
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| T |
35972794 |
cttcctctatcaaagaaaatcaagcagcgcaatcaactcttgaatcagacattgttaaatacaagcagatactcaacatcgaaggtttgtttcttcatct |
35972893 |
T |
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| Q |
203 |
tcattgaaaagtatatattacttataaataacttttttgaatcatcatatgaaactatttcacctttttcaaagttgtaatatgctgatcattgaggacg |
302 |
Q |
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| T |
35972894 |
tcattgaaaagtatatattacttataaataacttttttgaatcatcatatgaaactatttcacctttttcaaagttgtaatatgctgatcattgaggacg |
35972993 |
T |
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| Q |
303 |
ttaatgattttgggtttattct |
324 |
Q |
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| T |
35972994 |
ttaatgattttgggtttattct |
35973015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 35952741 - 35953057
Alignment:
| Q |
5 |
agctgaatatttatataggaagaatatacataaaagtgattatgattagataatattattgttatgaacaggtggacttgatgtgtatgctgcgttttct |
104 |
Q |
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| T |
35952741 |
agctgaatgtttatataggcagaatatccatgaaaatgattaagctttgataatattattgtcttgcacaggtggacttgatatgtatgcggatttttct |
35952840 |
T |
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| Q |
105 |
tcctctatcaaagaaaatcaagcagcgcaatcaactcttgaatcagacattgttaaatacaagcagatactcaacatcgaaggtttgtttcttcatcttc |
204 |
Q |
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| T |
35952841 |
tcctataacaaagaaaatcaagcagtacaatcaactcttgaaccagaggttgttaaacacaagcagatcctcaactccgaaggtttgtttcttcatcttc |
35952940 |
T |
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| Q |
205 |
attgaaaagtatatattacttataaataacttttttgaatcatcatatgaaactatttcacctttttcaaagttgtaatatgctgatcattgaggacgtt |
304 |
Q |
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| T |
35952941 |
agccaaaagtatatattacttatcaatagcttttttgaatcatc--atgaaactatttcacccttttcaaagttgtaatacgctaatcattgaggacgtt |
35953038 |
T |
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| Q |
305 |
aatgattttgggtttattc |
323 |
Q |
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| T |
35953039 |
aatgacattgtgtttattc |
35953057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 35969779 - 35969931
Alignment:
| Q |
41 |
tgattatgattagataatattattgttatgaacaggtggacttgatgtgtatgctgcgttttcttcctctatcaaagaaaatcaagcagcgcaatcaact |
140 |
Q |
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| T |
35969779 |
tgattatgaattgataatattgatgtcttgcacaggtagacttaatatgtatgctgctttttcttcctctatcaaaaaaaatcaagcagagcaatcaact |
35969878 |
T |
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| Q |
141 |
cttgaatcagacattgttaaatacaagcagatactcaacatcgaaggtttgtt |
193 |
Q |
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| T |
35969879 |
catgaatcagacattgttagatccaagcagaaactcaaccttgaaggtatgtt |
35969931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 35979920 - 35980025
Alignment:
| Q |
72 |
acaggtggacttgatgtgtatgctgcgttttcttcctctatcaaagaaaatcaagcagcgcaatcaactcttgaatcagacattgttaaatacaagcaga |
171 |
Q |
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| T |
35979920 |
acaggtggacttcatatgtatgctgctttttcttcctctatcaaaaaaaatcaagcagaacaatcaactgatgaatcagacattgttagatccaaacaga |
35980019 |
T |
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| Q |
172 |
tactca |
177 |
Q |
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||||| |
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| T |
35980020 |
aactca |
35980025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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