View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2999_high_13 (Length: 237)

Name: NF2999_high_13

Description: NF2999

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2999_high_13

[»] chr4 (7 HSPs)

Alignment Details

Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 7)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 153; E-Value: 3e-81

Query Start/End: Original strand, 15 - 237

Target Start/End: Original strand, 33750170 - 33750392

Alignment:

Q	15	cttccttctcccccaccacactcacttccgatcaagaactctctgtcatcgtctctgccttaaccaatgtcgtctccggctccacctccaccgaatttca	114	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33750170	cttccttctccgccactacactcacctccgatcaagaactctctgtcatcgtctctgccttaaccaatgtcgtctccggctccacctccaccgaatttca	33750269	T

Q	115	cctcccaaatcccgccatcggannnnnnnnnnnnnnnnnnttagaaagaattgttccacctgcgaacatggaaacctgccaggaatgcaacattgcagga	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33750270	cctcccaaatcccgccatcggaagcagcagcagcagcagcttagaaagaattgttccacctgcgaacatagaaacctgccaggaatgcaacattgcagga	33750369	T

Q	215	tgcttaggatgcgatttcttccc	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33750370	tgcttaggatgcgatttcttccc	33750392	T

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Target: chr4; HSP #2

Raw Score: 50; E-Value: 9e-20

Query Start/End: Original strand, 18 - 107

Target Start/End: Original strand, 33720746 - 33720835

Alignment:

Q	18	ccttctcccccaccacactcacttccgatcaagaactctctgtcatcgtctctgccttaaccaatgtcgtctccggctccacctccaccg	107	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	33720746	ccttctccactaccaccctcacctccgatcaagaactctcagtcatcgtcgctgccctaaccaacgtagtctccggttccacctccaccg	33720835	T

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Target: chr4; HSP #3

Raw Score: 42; E-Value: 0.000000000000006

Query Start/End: Original strand, 22 - 107

Target Start/End: Original strand, 33735359 - 33735444

Alignment:

Q	22	ctcccccaccacactcacttccgatcaagaactctctgtcatcgtctctgccttaaccaatgtcgtctccggctccacctccaccg	107	Q
		\|\|\|\|\|\|\| \|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33735359	ctcccccgccgctctcacctccgatcaagaactctccgccatcgttgctgctttaaccaacgtagtctccggctccacctccaccg	33735444	T

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Target: chr4; HSP #4

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 168 - 235

Target Start/End: Original strand, 33718850 - 33718917

Alignment:

Q	168	ttccacctgcgaacatggaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttc	235	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	33718850	ttccaccaacgaacatggaaacctgccgcgaatgcaacatagcaggatgtttaggatgcaatttcttc	33718917	T

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Target: chr4; HSP #5

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 178 - 237

Target Start/End: Original strand, 33720864 - 33720923

Alignment:

Q	178	gaacatggaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttccc	237	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	33720864	gaacatagaaacctgtcgggaatgcaacatagcaggatgtttaggatgcaatttcttccc	33720923	T

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Target: chr4; HSP #6

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 17 - 107

Target Start/End: Original strand, 33718693 - 33718783

Alignment:

Q	17	tccttctcccccaccacactcacttccgatcaagaactctctgtcatcgtctctgccttaaccaatgtcgtctccggctccacctccaccg	107	Q
		\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\| \| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	33718693	tccttctcctcctccactctcccctccgatcaagaacaatccgtcattgtcaccgccctaaccaaagtcgtctccggctccacctcaaccg	33718783	T

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Target: chr4; HSP #7

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 191 - 237

Target Start/End: Original strand, 33735540 - 33735586

Alignment:

Q	191	tgccaggaatgcaacattgcaggatgcttaggatgcgatttcttccc	237	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	33735540	tgccgggaatgcaacatagcaggatgtttaggatgcaatttcttccc	33735586	T

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