View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2999_high_4 (Length: 345)
Name: NF2999_high_4
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 2514764 - 2515085
Alignment:
| Q |
17 |
cattacctgccgctcagcagctgatctcgcattgcaaactctctcaagttcagttgaaagagaaacttgcatctgctcagcttcatttctggcttctttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2514764 |
cattacctgccgctcagcagctgatctcgcattgcaaactctctcaagttcagttgaaagagaaacttgcatctgctcagcttcatttctggcttctttt |
2514863 |
T |
|
| Q |
117 |
tcttttctataacattccatcacttcctggtagccaaaaacacaagaaataaggtcataaagcaaaagaaaacatcaccaggaatatccaatcacaacaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2514864 |
tcttttctataacattccatcacttcctggtagccaaaaacacaagaaagaaggtcataaagcaaaag-aaacatcaccaggaatatccaatcacaacaa |
2514962 |
T |
|
| Q |
217 |
tgtggcaaacaaccataccaatttatctgattcttcctttgcaatcttctcttctaaagaggaaattgtcgtcctcaaatttgatatagcctcattcaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2514963 |
tgtggcaaacaaccataccaatttatctgattcttcctttgcaatcttctcttctaaagaggaaattgtcatcctcaaatttgatatagcctcattcaat |
2515062 |
T |
|
| Q |
317 |
tctgctatcttcatgttcatctc |
339 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2515063 |
tctgctatcttcatgttcatctc |
2515085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University