View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_high_5 (Length: 325)
Name: NF2999_high_5
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 47027907 - 47027683
Alignment:
| Q |
16 |
tacccttctatgtttttctcctcacagtagtttttgaaggcaatacagactctctgaactctctgcgcgccaatgctgtattttccaataactcaacgac |
115 |
Q |
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| T |
47027907 |
tacccttctatgtttttctcctcacagtagtttttgaaggcaatacagactctctgaactctctgagcgccaatgctgtattttccaataactcaacgac |
47027808 |
T |
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| Q |
116 |
ttatcaaaacagcatatacaa----tag---tttcttatcttgttttgaggaattaataagtgactttaatttgtatgatttcttatcttatttcaagaa |
208 |
Q |
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| T |
47027807 |
ttatcaaaa----ttatacaagttgtagaaacaacatatcttgttttgaggaattaataagtgagtttaatttgtatgatttcttatcttatttcaagaa |
47027712 |
T |
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| Q |
209 |
----taaggaaaggtgaatcaatctttta |
233 |
Q |
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| T |
47027711 |
taattaaggaaaggtgaatcaatctttta |
47027683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 47027655 - 47027572
Alignment:
| Q |
233 |
aaagattaatatattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaatgttattttctt |
316 |
Q |
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| T |
47027655 |
aaagattaatatattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaatgttattttctt |
47027572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 36582466 - 36582527
Alignment:
| Q |
244 |
tattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaat |
305 |
Q |
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| T |
36582466 |
tattacctggagctgctacctttcaattggtgaacatgagcatccattctcttaaaatcaat |
36582527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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