View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_low_1 (Length: 606)
Name: NF2999_low_1
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 202 - 591
Target Start/End: Complemental strand, 41392166 - 41391776
Alignment:
| Q |
202 |
ggtccaattcaagaagaactagaaaggcaccgatccaccgagaaacgcgacgaggattccgcaaccctcttgtattgggttacaaggggtgcccggctat |
301 |
Q |
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| T |
41392166 |
ggtccaattcaagaagaactagaaaggcaccgatccaccgagaaacgcgacgaggattccgcaaccctcttgtattgggttacgaggggtgcccggctat |
41392067 |
T |
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| Q |
302 |
catctacatttgtctcaaagcaaccacccaagtgagtttgacacaacatttttatcagaaa-ccttaaggccaccacttttctaagcaatgtgagactta |
400 |
Q |
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| T |
41392066 |
catctacatttggctcaaagcaaccacccaagtgagtttgacacaacatttttatcagaaaaccttaaggccaccacttttctaagcaatgtgagactta |
41391967 |
T |
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| Q |
401 |
taacttagtaatgttcttagccgtatacaactgaacacgccgtctagacactttatcatgaagactttcgacacaaggagaagatcgaagaaccccggct |
500 |
Q |
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| T |
41391966 |
taacttagtaatgttcttaactgtatacaactgaacacgccgtctagacaccttatcatgaagactttcgacacaaggagaagatcgaagaaccccggct |
41391867 |
T |
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| Q |
501 |
ctgatatcaatgttgagtcacaagaggagcccgaatgatcatctacattaaacttaggacaatcatataaatgagttgatcataacatttt |
591 |
Q |
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| T |
41391866 |
ctgataccaatgttgagttacaagaggagcccgaatgatcatctacattaaacttaggacaatcgtataaatgagttgatcataacatttt |
41391776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 41392368 - 41392248
Alignment:
| Q |
1 |
aaggaaatacaaaatgtacttcaacccattacaagggaagcagaaccnnnnnnnn-gaggtcacaaccaaaagagccgggtgtaaaaccatgcatagaac |
99 |
Q |
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| T |
41392368 |
aaggaaatacaaaatgtacttcaacccattacaagggaagcagaaccaaaaaaaaagaggtcacaaccaaaagagccgggtggaaaaccatgcatagaac |
41392269 |
T |
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| Q |
100 |
gacggagagaaaccacatagg |
120 |
Q |
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| T |
41392268 |
gacggagagaaaccacatagg |
41392248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 531
Target Start/End: Complemental strand, 34544348 - 34544266
Alignment:
| Q |
451 |
ctttatcatgaagactttcgacacaaggagaaga--tcgaagaaccccggctctgatatcaatgttgagtcacaagaggagcc |
531 |
Q |
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| T |
34544348 |
ctttgtcaagaagactttcgacacaaggagaacacttcgttgaacctcggctctgataccaatgttgggtcacgaggggagcc |
34544266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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