View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_low_10 (Length: 295)
Name: NF2999_low_10
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 126 - 276
Target Start/End: Complemental strand, 27436445 - 27436295
Alignment:
| Q |
126 |
cctgattcctaaccggggtgaccgctcctttttctctccaatcgaaatcatgaggaaggttctctgtcgaaagaataggtgcagcttttgcatgtctcgg |
225 |
Q |
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| T |
27436445 |
cctgattcctaaccggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggtcgaaagaataggtgcagcttttgcatgtctcgg |
27436346 |
T |
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| Q |
226 |
taaccctactccttttaatcccaagatgctattatgaaactccctcggagt |
276 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27436345 |
taaccctactccttttaatcccaagatgctattacgaaactccctcggagt |
27436295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 126 - 276
Target Start/End: Complemental strand, 27944937 - 27944787
Alignment:
| Q |
126 |
cctgattcctaaccggggtgaccgctcctttttctctccaatcgaaatcatgaggaaggttctctgtcgaaagaataggtgcagcttttgcatgtctcgg |
225 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
27944937 |
cctgattcctaaccggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggacgaaagaataggtgcagcttttgcatgtctcgg |
27944838 |
T |
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| Q |
226 |
taaccctactccttttaatcccaagatgctattatgaaactccctcggagt |
276 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27944837 |
taaccctactccttttaatcccaagatgctattacgaaactccctcggagt |
27944787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 126 - 276
Target Start/End: Original strand, 27549791 - 27549941
Alignment:
| Q |
126 |
cctgattcctaaccggggtgaccgctcctttttctctccaatcgaaatcatgaggaaggttctctgtcgaaagaataggtgcagcttttgcatgtctcgg |
225 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
27549791 |
cctgattcctaacaggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggacgaaagaataggtgcagcttttgcatgtctcgg |
27549890 |
T |
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| Q |
226 |
taaccctactccttttaatcccaagatgctattatgaaactccctcggagt |
276 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27549891 |
taaccctactccttttaatcccaagatgctattacgaaactccctcggagt |
27549941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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