View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_low_11 (Length: 255)
Name: NF2999_low_11
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 161574 - 161709
Alignment:
| Q |
117 |
gatagtttgtctataaaacccataccatcagtagagtaaatcaatgctagtttctcatgtacttcagaagaagaaagaaggagtaataaatcattacata |
216 |
Q |
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| T |
161574 |
gatagtttgtctataaaacccataccatcaatagagtaaatcaatgctagtttctcatgtacttcagaa---gaaagaaggagtaataaatcattacata |
161670 |
T |
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| Q |
217 |
tgttgagagataaccattaatgcaacaattatcaacaga |
255 |
Q |
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| T |
161671 |
tgttgagagataaccattaatgcaacaattatcaacaga |
161709 |
T |
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Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 161447 - 161549
Alignment:
| Q |
19 |
aaacccaaaaagacaacatgaatataaaaacaacaaattagcatgaatacaatctcgaatggcatgaagcaaagttccaacctccacacaacacattaga |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
161447 |
aaacccaaaaagacaacatcaatataaaaacaacaaattagcatgaatacagtctcgaatggcatgaagcaaagttctaacctccacacaacacattaga |
161546 |
T |
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| Q |
119 |
tag |
121 |
Q |
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||| |
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| T |
161547 |
tag |
161549 |
T |
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