View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_low_12 (Length: 243)
Name: NF2999_low_12
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5655721 - 5655464
Alignment:
| Q |
1 |
tcaaatggttctgtgtttcttgatggtaattataaattgcatttatttaccatttgaaaacattacatttctataggtcaaaatatgttagtcaataggt |
100 |
Q |
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| T |
5655721 |
tcaaatggttctgtgtttcttgatggtaattataaattgcatttatttaccatttgaaaacattacatttctataggtcaaaatatgttagtcaataggt |
5655622 |
T |
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| Q |
101 |
aacactaataaaatgctgcacaa---------------agttttaatacttttacaaatcttgtttcaatttctgtttctttatgatatctaattgtaaa |
185 |
Q |
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| T |
5655621 |
aacactaataaaatgctgcacaaattcacaagtactatagttttaatacttttacaaatcttgtttcaatttctgtttctttatgatatctaattgtaaa |
5655522 |
T |
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| Q |
186 |
atttggttacaggaatgaaacttgtatttgagtctgagaaagcacaatgggtaggaac |
243 |
Q |
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| T |
5655521 |
atttggttacaggaatgaaacttgtatttgagtctgagaaagcacaatgggtaggaac |
5655464 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 47048974 - 47049012
Alignment:
| Q |
187 |
tttggttacaggaatgaaacttgtatttgagtctgagaa |
225 |
Q |
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| T |
47048974 |
tttggttacaggaatgaaacttgtattcgaatctgagaa |
47049012 |
T |
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