View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_low_13 (Length: 239)
Name: NF2999_low_13
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_low_13 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 161934 - 161735
Alignment:
| Q |
16 |
agaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaatacctacaagtaggaaattaatgtagacataaaac |
115 |
Q |
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| T |
161934 |
agaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaaaacctacaagtaggaaattaatgtagacataaaac |
161835 |
T |
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| Q |
116 |
tcagtttaggcatactgtttacatagactaggtaaactcattaaaactctgtttacatctttcaacaaggagatctaatcactcttctccggtttgttct |
215 |
Q |
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| T |
161834 |
tcagtttaggcatactgtttacatagactaggtaaactcatt-aaactatgtttacatctttcaacaaggagatctaatcactcttctccggtttgttct |
161736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 102833 - 102746
Alignment:
| Q |
16 |
agaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaatacctacaa-gtaggaaattaat |
102 |
Q |
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| T |
102833 |
agaatctctttgcgatgttctcgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgcaatgtagaaaattaat |
102746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 13051704 - 13051643
Alignment:
| Q |
16 |
agaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacaca |
77 |
Q |
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| T |
13051704 |
agaatctctttgcaatgctcttgtgggaataccaaatcaagatgtcccgtaatgtaaacaca |
13051643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 12138445 - 12138514
Alignment:
| Q |
16 |
agaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaatacct |
85 |
Q |
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| T |
12138445 |
agaatctccttacgatgctcttttgagaatatagaatcaagatgtcctgtaatgtacatacagaaaacct |
12138514 |
T |
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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 93603 - 93658
Alignment:
| Q |
16 |
agaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgta |
71 |
Q |
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| T |
93603 |
agaatctctttacgatgttccggtgggaatacagaatcaagatgtccagtaatgta |
93658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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