View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_low_3 (Length: 413)
Name: NF2999_low_3
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 29207014 - 29206626
Alignment:
| Q |
17 |
aagagatagtgataatggagttgatgatgaacaagaaggcaatgatgatgaagttagctttgttggttttccttttgggcttcacttcaactattgttga |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29207014 |
aagagatagtgataatggatttgatgatgaacaagaaggcaatggtgatgaagttagctttgttggttttccttttgggcttcacttcaactgttgttga |
29206915 |
T |
|
| Q |
117 |
tgctcgtttcgaccgagcatccttcatcactcaactgctctccaatggcgaagctaattacgatgtaaaatccacaacaacagcatgctgtaatagctgc |
216 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29206914 |
tgctcgtttcgacggatcatccttcatcactcaactgctctccaatggtgaagctacttacgaagtaaaatccacaacaacagcatgctgtaatagctgc |
29206815 |
T |
|
| Q |
217 |
ccttgcacaaaatcaatccctcctcagtgtcactgtgctgatattggagaaaaatgtcactcagcttgcaaaagatgcctttgcacaagatcttttcctc |
316 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206814 |
ccttgcacaaaatcaattcctcctcagtgtcactgtgctgatattggagaaaaatgtcactcagcttgcaaaagatgcctttgcacaagatcttttcctc |
29206715 |
T |
|
| Q |
317 |
cacagtgccgttgcactgataccactgatttctgctatgaaccatgtagctactcctccaatggtggatctcactaagtttgagtataa |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206714 |
cacagtgccgttgcactgataccactgatttctgctatgaaccatgtagctactcctccaatggtggatctcactaagtttgagtataa |
29206626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 29158405 - 29158077
Alignment:
| Q |
20 |
agatagtgataatggagttgatgatgaacaagaaggcaatgatgatgaagttagctttgttggttttccttttgggcttcacttcaactattgttgatgc |
119 |
Q |
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| T |
29158405 |
agatagtgataatggtgttgatgatgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgc |
29158306 |
T |
|
| Q |
120 |
tcgtttcgaccgagcatccttcatcactcaactgctctccaatggcgaagctaattacgatgtaaaatccacaacaacagcatgctgtaatagctgccct |
219 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| || ||||||| |
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| T |
29158305 |
tcgtttcgatcgggcatccttcatcactcaactgctctccaatggtgaagctaatacc------aaatccacaacaacagcatgctgtgatttctgccct |
29158212 |
T |
|
| Q |
220 |
tgcacaaaatcaatccctcctcagtgtcactgtgctgatattggagaaaaatgtcactcagcttgcaaaagatgcctttgcacaagatcttttcctccac |
319 |
Q |
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||||||| ||||||||| ||||| ||||| ||| ||||| || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
29158211 |
tgcacaagatcaatcccacctcaatgtcagtgtactgatgttaaagaaaaatgtcactcagcttgcaaaagttgcctttgcacacggtcttttcctccac |
29158112 |
T |
|
| Q |
320 |
agtgccgttgcactgataccactgatttctgctat |
354 |
Q |
| |
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|||| |||||| ||||| |||| | ||||||||| |
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| T |
29158111 |
agtgtcgttgctatgatatcactaacttctgctat |
29158077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 29162036 - 29161860
Alignment:
| Q |
60 |
gatgatgaagttagctttgttggttttccttttgggcttcacttcaactattgttgatgctcgtttcgaccgagcatccttcatcactcaactgctctcc |
159 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| | | |||||||||| |||||| | |||| |
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| T |
29162036 |
gatgatgaagttagctttattggtttttcttttgggcttcacttcaactgttgttgatgctcgtttcgatccaacatccttcataactcaagtaatctca |
29161937 |
T |
|
| Q |
160 |
aatggcgaagctaattacgatgtaaaatccacaacaacagcatgctgtaatagctgcccttgcacaaaatcaatccc |
236 |
Q |
| |
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||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||| |||| |
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| T |
29161936 |
aatggtgaagctgcttacgatgtcaaatccacaacaacaggatgctgtaatagctgccaatgcacaagatcattccc |
29161860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 190 - 354
Target Start/End: Complemental strand, 29145110 - 29144946
Alignment:
| Q |
190 |
acaacaacagcatgctgtaatagctgcccttgcacaaaatcaatccctcctcagtgtcactgtgctgatattggagaaaaatgtcactcagcttgcaaaa |
289 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||| || || ||| ||||||||||||||| |||||||||||||||||||| |
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| T |
29145110 |
acaacaacagcatgctgtgattcctgcccttgcacaaaatcaatccctcctcaatgccattgtactgatattggagaaacatgtcactcagcttgcaaaa |
29145011 |
T |
|
| Q |
290 |
gatgcctttgcacaagatcttttcctccacagtgccgttgcactgataccactgatttctgctat |
354 |
Q |
| |
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| || |||||||||| |||| ||||||||||||| | ||| |||||| |||||| ||||||||| |
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| T |
29145010 |
gctgtctttgcacaaaatctattcctccacagtgtcactgcgctgatatcactgacttctgctat |
29144946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 29153784 - 29153634
Alignment:
| Q |
17 |
aagagatagtgataatggagttgatgat---gaacaagaaggcaatgatgatgaagttagctttgttggttttccttttgggcttcacttcaactattgt |
113 |
Q |
| |
|
|||||||||| | |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
29153784 |
aagagatagtaacaatggagttgatgaacaagaacaagaaggcaatggtgatgaagttagctttgctggttttccttttgggcttcacttcaactgttgt |
29153685 |
T |
|
| Q |
114 |
tgatgctcgtttcgaccgagcatccttcatcactcaactgctctccaatgg |
164 |
Q |
| |
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||||||||||||||| | |||||||||| |||||| || |||| ||||| |
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| T |
29153684 |
tgatgctcgtttcgattcaacatccttcataactcaagtgatctcaaatgg |
29153634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 29145170 - 29145111
Alignment:
| Q |
61 |
atgatgaagttagctttgttggttttccttttgggcttcacttcaactattgttgatgct |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||| ||||| || ||||||||| |
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|
| T |
29145170 |
atgatgaaattagctttgttggttttcctcttgagcttcacatcaaccatggttgatgct |
29145111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 29153547 - 29153497
Alignment:
| Q |
239 |
ctcagtgtcactgtgctgatattggagaaaaatgtcactcagcttgcaaaa |
289 |
Q |
| |
|
||||||||| |||||||||| ||||| ||| |||||||||||||||||||| |
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|
| T |
29153547 |
ctcagtgtcgctgtgctgatgttggaaaaacatgtcactcagcttgcaaaa |
29153497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 29209664 - 29209547
Alignment:
| Q |
65 |
tgaagttagctttgttggttttccttttgggcttcacttcaactattgttgatgctcgtttcgaccgagcatccttcatcactcaactgctctccaatgg |
164 |
Q |
| |
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|||||||| || ||||| |||| || ||| ||||||| |||||||||||||||||||||| || | || | |||| ||||| | ||||||||||||| |
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| T |
29209664 |
tgaagttatctgtgttgcttttgctcttgtgcttcaccgcaactattgttgatgctcgttttgattcaacaccattcaccactcgagtgctctccaatgg |
29209565 |
T |
|
| Q |
165 |
cgaagctaattacgatgt |
182 |
Q |
| |
|
|||| || ||| ||||| |
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|
| T |
29209564 |
tgaagatacttatgatgt |
29209547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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