View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_low_7 (Length: 317)
Name: NF2999_low_7
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 16096955 - 16097154
Alignment:
| Q |
17 |
aaggaaaattgagaaaataaattcaacttcattcatgaacgtcttagggccaatacagtagcttgtacctgtgtcgaaagttcctctatatttgtttact |
116 |
Q |
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| T |
16096955 |
aaggaaaattgagaaaataaattcaacttcattcatgaacgtcttagggccaatacagtagcttgtacctgtgtcgaaagttcctctatatttgtttact |
16097054 |
T |
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| Q |
117 |
catcaacttttggttggccaagatagcactattttcacttataccaaatacccctctcttgcctcgctcggtctcggcacgatactcattttgagctatg |
216 |
Q |
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| T |
16097055 |
catcaacttttggttggccaagatagcactattttcacttacaccaaatacccctctcttgcctcgctcggtctcggcacgatactcattttgagctatg |
16097154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 16097235 - 16097328
Alignment:
| Q |
224 |
ttaagccttaaacttttggtaaatatttacatctgggttttttcacccaagtcatgggttggtcatctttttagtaacagtttgaacctctccc |
317 |
Q |
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| T |
16097235 |
ttaagccttaaacttttggtaaatatttacatctgggttttttcacccaagtcatgggttggtcatctttttagtaacagtttaaacctctccc |
16097328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 12815844 - 12815896
Alignment:
| Q |
172 |
ctcttgcctcgctcggtctcggcacgatactcattttgagctatgctctcaat |
224 |
Q |
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| T |
12815844 |
ctcttaccacgctcggtctcggcacgattcgcattttgagccatgttctcaat |
12815896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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