View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2999_low_8 (Length: 307)

Name: NF2999_low_8
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2999_low_8
NF2999_low_8
[»] chr2 (4 HSPs)
chr2 (27-287)||(40255363-40255627)
chr2 (180-247)||(15492724-15492791)
chr2 (181-242)||(9002456-9002517)
chr2 (172-249)||(41153144-41153221)
[»] chr5 (1 HSPs)
chr5 (172-249)||(13391560-13391637)
[»] chr3 (6 HSPs)
chr3 (176-249)||(29290811-29290884)
chr3 (172-205)||(22003834-22003867)
chr3 (172-205)||(22011351-22011384)
chr3 (172-249)||(32711240-32711317)
chr3 (172-249)||(48593175-48593252)
chr3 (175-247)||(19649620-19649692)
[»] chr8 (3 HSPs)
chr8 (184-247)||(10632381-10632444)
chr8 (172-249)||(6189663-6189740)
chr8 (175-249)||(27789320-27789394)
[»] chr7 (1 HSPs)
chr7 (172-247)||(40364618-40364693)
[»] chr6 (3 HSPs)
chr6 (176-248)||(7649833-7649905)
chr6 (181-247)||(7384778-7384844)
chr6 (172-205)||(22880956-22880989)
[»] chr1 (4 HSPs)
chr1 (174-242)||(34719406-34719469)
chr1 (195-249)||(15290635-15290689)
chr1 (174-240)||(48377830-48377896)
chr1 (172-249)||(28038856-28038933)
[»] chr4 (3 HSPs)
chr4 (172-251)||(20114097-20114176)
chr4 (172-249)||(22235289-22235366)
chr4 (177-246)||(32645533-32645602)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 27 - 287
Target Start/End: Original strand, 40255363 - 40255627
Alignment:
Q  27 aaaaagtttaattttgacaaatgtgatatgaaacatatactatattatatgtagatcttacaaaattatgtagactcgccataattgtggttaaactaaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40255363 aaaaagtttaattttgacaaatgtgatatgaaacatatactatattatatgtagatcttacaaaattatgtagactcgccataaatgtggttaaactaaa 40255462  T
Q  127 cnnnnnnnttacttcatccgatcattattgtaatt---nnnnnnnnnnttagattcattgaataatttatatatttagtttatattattgatcaaatagt 223  Q
    |       | |||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40255463 caaaaaaatcacttcatccgatcattattgtaattaaaaaaaatatttttagattcattgaataatttatatatttagtttatattattgatcaaatagt 40255562  T
Q  224 tcagttattcaatgaatctaaaaagtaa-nnnnnnnnataatagtaaccgaattaaatgtttttt 287  Q
    ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  40255563 tcagttattcaatgaatctaaaaagtaatttttttttataatagtaaccgaattaaatgtttttt 40255627  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 15492791 - 15492724
Alignment:
Q  180 attgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaa 247  Q
    |||||||||||||| ||| ||   |||||||| |||||||||  ||||||||||||| ||||||||||    
T  15492791 attgaataatttatgtatctaacctatattatagatcaaataaatcagttattcaatcaatctaaaaa 15492724  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 9002517 - 9002456
Alignment:
Q  181 ttgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatct 242  Q
    |||||||||| |||||||| || ||||||||  ||||||||  | |||||||||||||||||    
T  9002517 ttgaataattgatatatttggtctatattatatatcaaatacataagttattcaatgaatct 9002456  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 41153221 - 41153144
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    ||||||||||||| ||||| || ||||| ||||||| ||| || ||||||  ||| |||| ||||||||| |||||||    
T  41153221 ttagattcattgagtaattgatgtatttggtttataatatagaccaaatacatcatttatgcaatgaatcaaaaaagt 41153144  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 13391637 - 13391560
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    |||| |||||| ||||| |||| |||||||| ||||||||||| ||||||  ||| ||||| ||||||||||||||||    
T  13391637 ttaggttcattcaataaattatgtatttagtctatattattgaccaaatacatcatttattgaatgaatctaaaaagt 13391560  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 29290884 - 29290811
Alignment:
Q  176 attcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    ||||||||||||| |||| |||||||| |||| ||| ||||| |||  |||||| |||||||||||||||||||    
T  29290884 attcattgaataacttatgtatttagtctataatatagatcagatacatcagttgttcaatgaatctaaaaagt 29290811  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 22003834 - 22003867
Alignment:
Q  172 ttagattcattgaataatttatatatttagttta 205  Q
    |||||| |||||||||||||||||||||||||||    
T  22003834 ttagatacattgaataatttatatatttagttta 22003867  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 22011351 - 22011384
Alignment:
Q  172 ttagattcattgaataatttatatatttagttta 205  Q
    |||||| |||||||||||||||||||||||||||    
T  22011351 ttagatacattgaataatttatatatttagttta 22011384  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 32711240 - 32711317
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    |||| |||||||||||||| || ||||| |  |||||||| || || |||  ||| ||||||||||||||||||||||    
T  32711240 ttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaagt 32711317  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 48593252 - 48593175
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    |||||||||||||||||||||| ||||| || |||||| | || |  |||  ||| |||||||||| |||||||||||    
T  48593252 ttagattcattgaataatttatgtatttggtctatattctagacccgatacatcaattattcaatgtatctaaaaagt 48593175  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 19649620 - 19649692
Alignment:
Q  175 gattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaa 247  Q
    |||||||||||||||| || |||||||| |||||| | || | ||||  ||| ||| ||||||||||||||||    
T  19649620 gattcattgaataattgatgtatttagtctatattttagaccgaatacatcaattactcaatgaatctaaaaa 19649692  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 10632444 - 10632381
Alignment:
Q  184 aataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaa 247  Q
    ||||||| ||||||||||| |||||||| ||||||||| || ||||||||||| ||| ||||||    
T  10632444 aataattgatatatttagtatatattatagatcaaatacttaagttattcaataaatataaaaa 10632381  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 6189740 - 6189663
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    ||||||||||| ||||| | || |||||||| ||||||||||| ||||||  ||| |||||| ||||| |||||||||    
T  6189740 ttagattcattcaataaatgatgtatttagtctatattattgaccaaatacatcatttattcgatgaacctaaaaagt 6189663  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 27789320 - 27789394
Alignment:
Q  175 gattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    |||||||||||||||| || ||| | || |||| |||||| ||||||  ||||||||||||||||| ||| ||||    
T  27789320 gattcattgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaatgaatgtaacaagt 27789394  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 40364618 - 40364693
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaa 247  Q
    |||||||||||||| || | |||||||| ||||||||||| |||||||||  ||| ||||||||| || |||||||    
T  40364618 ttagattcattgaaaaactgatatatttggtttatattatagatcaaatacatcaattattcaattaacctaaaaa 40364693  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 7649905 - 7649833
Alignment:
Q  176 attcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaag 248  Q
    ||||||||||||||| || ||||| || |||||| | || ||||||  ||| |||||||||||||||||||||    
T  7649905 attcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatctaaaaag 7649833  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 7384778 - 7384844
Alignment:
Q  181 ttgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaa 247  Q
    |||||||||| ||  || |||| ||||||||||||||||||  ||||||||||||  ||||||||||    
T  7384778 ttgaataattgatgcatctagtctatattattgatcaaatacatcagttattcaaccaatctaaaaa 7384844  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 22880956 - 22880989
Alignment:
Q  172 ttagattcattgaataatttatatatttagttta 205  Q
    |||||| |||||||||||||||||||||||||||    
T  22880956 ttagatacattgaataatttatatatttagttta 22880989  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 34719406 - 34719469
Alignment:
Q  174 agattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatct 242  Q
    |||||||||||||||||||||||||| ||||||||     | ||||||  |||||||||||||||||||    
T  34719406 agattcattgaataatttatatatttggtttatat-----accaaataaatcagttattcaatgaatct 34719469  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 15290635 - 15290689
Alignment:
Q  195 tatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    |||||||| ||||||||||| ||||||  ||| ||||| ||||||||||||||||    
T  15290635 tatttagtctatattattgaccaaatacatcatttattaaatgaatctaaaaagt 15290689  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 48377830 - 48377896
Alignment:
Q  174 agattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaat 240  Q
    ||||| ||||||||||| || |||||||| ||||||||  ||||||||  ||| |||||||||||||    
T  48377830 agatttattgaataattgatgtatttagtctatattataaatcaaatacgtcacttattcaatgaat 48377896  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 28038933 - 28038856
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    ||||||||||| | ||| | || |||||||||||||||||||| ||||||   || ||| | ||||||||||||||||    
T  28038933 ttagattcatttattaaatgatgtatttagtttatattattgaccaaatacaacatttaatgaatgaatctaaaaagt 28038856  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 20114097 - 20114176
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagtaa 251  Q
    |||||| ||||||||||||||| ||||| ||||| | ||| || || |||  | ||||||||||| ||||||||||||||    
T  20114097 ttagatacattgaataatttatgtatttggtttagaatatagaccatatacattagttattcaattaatctaaaaagtaa 20114176  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 22235366 - 22235289
Alignment:
Q  172 ttagattcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaagt 249  Q
    ||||||||||||||||| | || ||| | ||||||||||  |||||||||  ||| |||||||| ||| |||||||||    
T  22235366 ttagattcattgaataactgatgtatctggtttatattaaagatcaaatatatcaattattcaaagaacctaaaaagt 22235289  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 32645533 - 32645602
Alignment:
Q  177 ttcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaa 246  Q
    |||||||||||| | || |||||||| |||  |||||| ||||||  ||| |||||||||||||||||||    
T  32645533 ttcattgaataactgatgtatttagtctattatattgaccaaatacatcaattattcaatgaatctaaaa 32645602  T

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