View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2999_low_9 (Length: 298)
Name: NF2999_low_9
Description: NF2999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2999_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 52512215 - 52511929
Alignment:
| Q |
1 |
ttccaactccaagtagaggcaacaataatattagtagccagattcacccgagcatcgatatatcaaacttgaatcattactcgtcttcgtcttctaccac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
52512215 |
ttccaactccaagtagaggcaacaataatattagtagccagattcacccgagcatcgatatatcaaacttgaaccattactcgtcttcgtctgctaccac |
52512116 |
T |
|
| Q |
101 |
atccttggatatgaacatgcagtcattacatctattaactaattcatcaacatcatttagtgctaatttacaagaccatcatcatagtagatttactact |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512115 |
atccttggatatgaacatgcagtcattagatctattaactaattcatcaacatcatttagtgctaatttacaagaccatcatcatagtagatttactact |
52512016 |
T |
|
| Q |
201 |
catgatcatgacaacctttcttttcatcttcatcttatgcagcaccaccaccccacgaacatgtcctcttctactaactctattcat |
287 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512015 |
catgatcatgacaacctttcttttcatcttcatcctatgcaacaccaccaccccacgaacatgtcctcttctactaactctattcat |
52511929 |
T |
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