View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3001_high_20 (Length: 326)

Name: NF3001_high_20
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3001_high_20
NF3001_high_20
[»] chr1 (7 HSPs)
chr1 (18-326)||(43149408-43149715)
chr1 (104-172)||(14790789-14790857)
chr1 (104-172)||(27441557-27441625)
chr1 (104-172)||(9555308-9555376)
chr1 (112-172)||(20995284-20995344)
chr1 (104-170)||(42738863-42738929)
chr1 (115-172)||(45808620-45808677)
[»] chr8 (6 HSPs)
chr8 (18-326)||(38057597-38057895)
chr8 (19-326)||(24452762-24453060)
chr8 (104-172)||(8845204-8845272)
chr8 (104-172)||(14489344-14489412)
chr8 (104-149)||(534152-534197)
chr8 (127-172)||(28459704-28459749)
[»] chr2 (6 HSPs)
chr2 (41-320)||(9880322-9880591)
chr2 (103-167)||(16862466-16862530)
chr2 (104-150)||(6520293-6520339)
chr2 (107-164)||(8567707-8567764)
chr2 (104-172)||(26318517-26318585)
chr2 (104-168)||(44189727-44189791)
[»] chr4 (4 HSPs)
chr4 (18-326)||(45050164-45050453)
chr4 (106-149)||(25913927-25913970)
chr4 (104-142)||(43345681-43345719)
chr4 (104-172)||(39755597-39755663)
[»] chr3 (7 HSPs)
chr3 (18-149)||(3285179-3285309)
chr3 (18-149)||(3272062-3272192)
chr3 (104-172)||(8238361-8238429)
chr3 (104-172)||(32004003-32004071)
chr3 (105-169)||(26955172-26955236)
chr3 (104-172)||(41768555-41768623)
chr3 (104-150)||(8552586-8552632)
[»] chr7 (6 HSPs)
chr7 (104-172)||(2626782-2626850)
chr7 (173-241)||(4883674-4883742)
chr7 (104-172)||(21072106-21072174)
chr7 (104-172)||(21015355-21015423)
chr7 (105-150)||(1437736-1437781)
chr7 (127-172)||(4883734-4883779)
[»] chr6 (3 HSPs)
chr6 (104-172)||(12952138-12952206)
chr6 (104-151)||(13240072-13240119)
chr6 (115-172)||(12413650-12413707)
[»] chr5 (4 HSPs)
chr5 (104-172)||(15831013-15831081)
chr5 (106-172)||(19337372-19337438)
chr5 (107-172)||(17174026-17174091)
chr5 (104-172)||(477788-477856)
[»] scaffold0003 (1 HSPs)
scaffold0003 (104-172)||(335842-335910)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 43149715 - 43149408
Alignment:
Q  18 atttggatgtcagttgtctgggaaatctggaaagagcgtaataacagagtttttcagagaaaagaagagtagcttcaagcaaattagtgaaagggtgaag 117  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  43149715 atttgaatgtcagttgtctgggcaatctg-aaagagcgtaataacagagtttttcagagaaaagaagagtagattcaagcaaattagcgaaagggtgaag 43149617  T
Q  118 cttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatcttgattatcaattgtggcggaagagtcctgtagcttgcttaatgt 217  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  43149616 cttcagtccttttggtggttgaaatcgaaatacactactttcgattttgattatcttgattatcaattgtggcggcagagtcttgtagcttgcttaatgt 43149517  T
Q  218 ctgtattttagcttgtttcttctgttttgt-ttcctttcttatctgtttttctccggttagccgttgtggtgtttgtactgtttgttgaactctgttttg 316  Q
    |||||||||||||||||||||||||||| | || |||| || ||||||||||| ||| | |||||||||||| |||||| | |||||||||| |||||||    
T  43149516 ctgtattttagcttgtttcttctgttttttgtttcttt-ttctctgtttttcttcggatggccgttgtggtgattgtacagattgttgaactttgttttg 43149418  T
Q  317 tctaggccct 326  Q
    ||||||||||    
T  43149417 tctaggccct 43149408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 14790857 - 14790789
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||| ||||||| ||| |||||||||||||||| ||||||||||| ||| |||||||||||||    
T  14790857 gtgaaagggtaaagcttccgtcattttggtggttgaaatcgaaatacactaattttgattttgattatc 14790789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 27441557 - 27441625
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    ||||||||||||||||||| || |||||||||||||||| |||||||| || ||| |||||||| ||||    
T  27441557 gtgaaagggtgaagcttcaatcattttggtggttgaaatcgaaatacattaattttgattttgactatc 27441625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 9555376 - 9555308
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||||| || |||||||||||||||| ||||||||||| ||| |||||||| ||||    
T  9555376 gtgaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacactaattttgattttgactatc 9555308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 20995344 - 20995284
Alignment:
Q  112 gtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||||||| |||| ||||||||| ||| ||||   ||||||||||||||||||||    
T  20995344 gtgaagcttcagtctttttagtggttgaagttgtaatatgttactttcgattttgattatc 20995284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 42738863 - 42738929
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgatta 170  Q
    |||||||||| |||||||  |||||||||||||| || | |||||| | ||||||||||| ||||||    
T  42738863 gtgaaagggttaagcttctatccttttggtggttaaagtcgaaatatattactttcgattatgatta 42738929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 45808620 - 45808677
Alignment:
Q  115 aagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||| || |||| ||||||||||| ||||||||||| ||| |||||||| ||||    
T  45808620 aagcttcaatcttttttgtggttgaaatcgaaatacactaattttgattttgactatc 45808677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 38057895 - 38057597
Alignment:
Q  18 atttggatgtcagttgtctgggaaatctggaaagagcgtaataacagagtttttcagagaaaagaagagtagcttcaagcaaattagtgaaagggtgaag 117  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||| |||| |||| |||||||    
T  38057895 atttggatgtcagttgtctgggcaatctggaatgagcgtaataacaaagtttttcaaagaaaagaagagcagcttcaagcaa-ttagcgaaatggtgaag 38057797  T
Q  118 cttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatcttgattatcaattgtggcggaagagtcctgtagcttgcttaatgt 217  Q
     ||||||| |||||||||||||||| |||||||  ||||||||||||||||||||         ||||||||||| ||||||||||||||| ||||||||    
T  38057796 tttcagtcattttggtggttgaaatcgaaatacgttactttcgattttgattatc---------aattgtggcggcagagtcctgtagctttcttaatgt 38057706  T
Q  218 ctgtattttagcttgtttcttctgttttgtttcctttcttatctgtttttctccggttagccgttgtggtgtttgtactgtttgttgaactctgttttgt 317  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  38057705 ctatattttagcttgtttcttctgttttgtttcctttcttctctgtttttctccagttagccgttgtggtgtttgtaccgtttgttgaactctattttgt 38057606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 24453060 - 24452762
Alignment:
Q  19 tttggatgtcagttgtctgggaaatctggaaagagcgtaataacagagtttttcagagaaaagaagagtagcttcaagcaaattagtgaaagggtgaagc 118  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||  |||||||||| |||| |||||||||||||||    
T  24453060 tttggatgtcagttgtctgggcaatctgaaaagagcgcaataacaaagtttttcagagaaaagaagatcagcttcaagc-aatttgtgaaagggtgaagc 24452962  T
Q  119 ttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatcttgattatcaattgtggcggaagagtcctgtagcttgcttaatgtc 218  Q
    || ||||||||||||||||||||| ||||||   |||||||||||         ||||||||||||| |||||| |||||||||||||||||||||||||    
T  24452961 ttaagtccttttggtggttgaaatcgaaatatgttactttcgatt---------ttgattatcaattatggcggcagagtcctgtagcttgcttaatgtc 24452871  T
Q  219 tgtattttagcttgtttcttctgttt--tgtttcctttcttatctgtttttctccggttagccgttgtggtgtttgtactgtttgt-tgaactctgtttt 315  Q
    | | ||||| ||||||| |||| |||  | |||||| | ||| ||| |||||| ||||  ||| |||||||| ||||||   |||| |||||||||||||    
T  24452870 tattttttatcttgttttttctattttctatttcctatttta-ctg-ttttcttcggtacgcctttgtggtgattgtacatattgtatgaactctgtttt 24452773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 8845204 - 8845272
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||  || ||| |||||||| ||||    
T  8845204 gtgaaagggtgaagcttaagtcattttggtggttgaaatcgaaatacgttaattttgattttgactatc 8845272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 14489412 - 14489344
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||||| |  |||||||||||||||| ||||||||||| ||| |||||||| ||||    
T  14489412 gtgaaagggcaaagcttcaatttttttggtggttgaaatcgaaatacactaattttgattttgactatc 14489344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 534197 - 534152
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaata 149  Q
    |||||||||||||||||||||| |||||||| ||||| | ||||||    
T  534197 gtgaaagggtgaagcttcagtctttttggtgattgaagtcgaaata 534152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 28459749 - 28459704
Alignment:
Q  127 ttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||||||||| ||||||||||| ||| |||||||| ||||    
T  28459749 ttttggtggttgaaatcgaaatacactaattttgattttgactatc 28459704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 41 - 320
Target Start/End: Original strand, 9880322 - 9880591
Alignment:
Q  41 aatctggaaagagcgtaataacagagtttttcagagaaaagaagagtagcttcaagcaaattagtgaaagggtgaagcttcagtccttttggtggttgaa 140  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  9880322 aatctggaatgagagtaataatagagtttttcagagaaaagaagagcagcttcaagcaa-ttagtgaaagggtgaagcttcagtcattttggtggttgaa 9880420  T
Q  141 attgaaatacactactttcgattttgattatcttgattatcaattgtggcggaagagtcctgtagcttgcttaatgtctgtattttagcttgtttcttct 240  Q
    || |||||||  |||||||||||||||         ||||||||||||| || | |||||| ||||||||||||||||| ||||||||||||||||||||    
T  9880421 atcgaaatacgttactttcgattttga---------ttatcaattgtggtggcaaagtcctatagcttgcttaatgtctatattttagcttgtttcttct 9880511  T
Q  241 gttttgtttcctttcttatctgtttttctccggttagccgttgtggtgtttgtactgtttgttgaactctgttttgtcta 320  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||    
T  9880512 gttttgtttcctttcttctctgtttttcttcgattagccgttgtggtgtttgtactgtttgttgaactctattttgtcta 9880591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 16862466 - 16862530
Alignment:
Q  103 agtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttga 167  Q
    ||||||||||||||||||||||| |||||||||||||| |  |||||| ||||||||||||||||    
T  16862466 agtgaaagggtgaagcttcagtctttttggtggttgaagtcaaaatacgctactttcgattttga 16862530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 6520293 - 6520339
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatac 150  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||    
T  6520293 gtgaaagggtgaagcttcagtcattttggtggttgaaatcgaaatac 6520339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 8567707 - 8567764
Alignment:
Q  107 aaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattt 164  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| || ||| |||||    
T  8567707 aaagggtgaagcttcagtcattttggtggttgaaatcgaaatacattaattttgattt 8567764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 26318517 - 26318585
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||||| || |||||||||||||||| |||||||  || ||| |||||||| ||||    
T  26318517 gtgaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacgttaattttgattttgactatc 26318585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 44189791 - 44189727
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgat 168  Q
    |||||||||| |||||||| |||||||||||||| || | ||||||   ||||||||||| ||||    
T  44189791 gtgaaagggttaagcttcaatccttttggtggttaaagtcgaaatatgttactttcgattgtgat 44189727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 45050453 - 45050164
Alignment:
Q  18 atttggatgtcagttgtctgggaaatctggaaagagcgtaataacagagtttttcagagaaaagaagagtagcttcaagcaaattagtgaaagggtgaag 117  Q
    |||||||||||||||||||||| ||||| |||||||||| | |||||  |||||||||||||||||| | |||||||||||| |||| ||||||||||||    
T  45050453 atttggatgtcagttgtctgggcaatctcgaaagagcgttacaacag--tttttcagagaaaagaagtgcagcttcaagcaa-ttagcgaaagggtgaag 45050357  T
Q  118 cttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatcttgattatcaattgtggcggaagagtcctgtagcttgcttaatgt 217  Q
    |||||||||||||||||  |||||| ||||||   ||| ||||||||||||         ||||||||||||||| ||| |||| |||||||||||||||    
T  45050356 cttcagtccttttggtgactgaaatcgaaatatgttaccttcgattttgat---------tatcaattgtggcggcagaatcctatagcttgcttaatgt 45050266  T
Q  218 ctgtattttagcttgtttcttctg-ttttgtttcctttcttatctgtttttctccggttagccgttgtggtgtttgtactgtttgttgaactctgttttg 316  Q
    | |||||||||||||||||||||| ||||||||| |        ||||||||| ||||| | | |||||||| |||||| | |||||| |||||||||||    
T  45050265 ccgtattttagcttgtttcttctgtttttgtttcat--------tgtttttcttcggttcgacattgtggtgattgtacagattgttggactctgttttg 45050174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 25913927 - 25913970
Alignment:
Q  106 gaaagggtgaagcttcagtccttttggtggttgaaattgaaata 149  Q
    |||||||||||||||||||  |||||||||||||||| ||||||    
T  25913927 gaaagggtgaagcttcagtttttttggtggttgaaatcgaaata 25913970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 43345681 - 43345719
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaat 142  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  43345681 gtgaaagagtgaagcttcagtcattttggtggttgaaat 43345719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 39755663 - 39755597
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||||| ||  ||||||||||||||| ||||||||||| ||| |||||||| ||||    
T  39755663 gtgaaagggcaaagcttcaatc--tttggtggttgaaatcgaaatacactaattttgattttgactatc 39755597  T

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Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 3285179 - 3285309
Alignment:
Q  18 atttggatgtcagttgtctgggaaatctggaaagagcgtaataacagagtttttcagagaaaagaagagtagcttcaagcaaattagtgaaagggtgaag 117  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||  ||||| ||||||||||||    
T  3285179 atttggatgtcagttgtctgagcaatctggaaagagcgtaataacaaagtttttcagagaaaagaagagcaacttcaagc-gattagcgaaagggtgaag 3285277  T
Q  118 cttcagtccttttggtggttgaaattgaaata 149  Q
    ||||||||||||||||||  ||||| ||||||    
T  3285278 cttcagtccttttggtggcagaaatcgaaata 3285309  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 3272062 - 3272192
Alignment:
Q  18 atttggatgtcagttgtctgggaaatctggaaagagcgtaataacagagtttttcagagaaaagaagagtagcttcaagcaaattagtgaaagggtgaag 117  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||| || || ||||||||||  ||||| ||||||||||||    
T  3272062 atttggatgtcagttgtctgagaaatctagaaagagcgtaaaaacaaagtttttcagagaaaaaaatagcagcttcaagc-gattagcgaaagggtgaag 3272160  T
Q  118 cttcagtccttttggtggttgaaattgaaata 149  Q
    |||| ||||||||||||| |||||| ||||||    
T  3272161 cttcggtccttttggtggctgaaatcgaaata 3272192  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 8238429 - 8238361
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||||||||||||||| || | ||||||||||| |||||||| || ||| |||||| ||||||    
T  8238429 gtgaaagggtgaagcttcagtcattctagtggttgaaatcgaaatacattaattttgattttcattatc 8238361  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 32004003 - 32004071
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||||| || |||||||||||||||| ||||||||||| ||| |||||||| ||||    
T  32004003 gtgaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacactaattttgattttgactatc 32004071  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 26955236 - 26955172
Alignment:
Q  105 tgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgatt 169  Q
    ||||||||| ||||||| ||| |||||||| ||||| | |||||||  |||||||||||||||||    
T  26955236 tgaaagggttaagcttcggtctttttggtgattgaagtcgaaatacgttactttcgattttgatt 26955172  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 41768555 - 41768623
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||| || ||||| || |||||||||||||||| ||||||  ||| ||| |||||||||||||    
T  41768555 gtgaaagggtaaaacttcattcattttggtggttgaaatcgaaatatgctaattttgattttgattatc 41768623  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 8552586 - 8552632
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatac 150  Q
    ||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  8552586 gtgaaagggtgaaacttcggtcattttggtggttgaaatcgaaatac 8552632  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 2626782 - 2626850
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||||||||| ||| ||||||| |||||    
T  2626782 gtgaaagggaaaagcttcagtcattttggtggttgaaatcgaaatacactaattttgattttgtttatc 2626850  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 4883742 - 4883674
Alignment:
Q  173 ttgattatcaattgtggcggaagagtcctgtagcttgcttaatgtctgtattttagcttgtttcttctg 241  Q
    |||||||||||||||||||| | | |||| |||| ||||||| |||||| |||||||||||||||||||    
T  4883742 ttgattatcaattgtggcggcacaatcctttagcatgcttaaagtctgttttttagcttgtttcttctg 4883674  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 21072106 - 21072174
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||| || ||||| || |||||||||||||||| ||||||||||| ||| |||||||| ||||    
T  21072106 gtgaaagggtaaaacttcaatctttttggtggttgaaatcgaaatacactaattttgattttgactatc 21072174  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 21015423 - 21015355
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||||| || |||||||||||||||| |||||||| || ||| |||||||| ||||    
T  21015423 gtgaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacattaattttgattttgactatc 21015355  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 1437736 - 1437781
Alignment:
Q  105 tgaaagggtgaagcttcagtccttttggtggttgaaattgaaatac 150  Q
    ||||||||||||||||||||| ||||| ||||| || |||||||||    
T  1437736 tgaaagggtgaagcttcagtctttttgatggtttaagttgaaatac 1437781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 4883779 - 4883734
Alignment:
Q  127 ttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    ||||||||||| |||| ||||||  |||||||||||||||||||||    
T  4883779 ttttggtggttaaaatcgaaatatgctactttcgattttgattatc 4883734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 12952138 - 12952206
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||| ||||||||||| ||||||||||||||||  ||||| | || ||| |||||||||||||    
T  12952138 gtgaaagggtaaagcttcagtcattttggtggttgaaatcaaaatataataattttgattttgattatc 12952206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 13240119 - 13240072
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaataca 151  Q
    |||||| ||||||||||||||| ||||||| |||||||| ||||||||    
T  13240119 gtgaaatggtgaagcttcagtcattttggttgttgaaatcgaaataca 13240072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 12413707 - 12413650
Alignment:
Q  115 aagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    ||||||||||| |  ||||||||||||| ||||||| ||| ||| |||||||||||||    
T  12413707 aagcttcagtcatgctggtggttgaaatcgaaatacgctaattttgattttgattatc 12413650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 15831013 - 15831081
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||||| || |||||||||||||||| |||||||||||  || |||||||| ||||    
T  15831013 gtgaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacactaactttgattttgactatc 15831081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 19337438 - 19337372
Alignment:
Q  106 gaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    ||||||||||||||| ||||  |||||||||||||||  |||||  ||| ||| |||||||||||||    
T  19337438 gaaagggtgaagctttagtcaatttggtggttgaaatcaaaatatgctatttttgattttgattatc 19337372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 17174026 - 17174091
Alignment:
Q  107 aaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    ||||||| |||||||  |||||||||||||| || | |||||| | ||||||||||| ||||||||    
T  17174026 aaagggttaagcttctatccttttggtggttaaagtcgaaatatattactttcgattatgattatc 17174091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 477856 - 477788
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||||| || ||||| |||||||||| ||||||||||| ||| || ||||| ||||    
T  477856 gtgaaagggcaaagcttcaatctttttgatggttgaaatcgaaatacactaattttgactttgactatc 477788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 335842 - 335910
Alignment:
Q  104 gtgaaagggtgaagcttcagtccttttggtggttgaaattgaaatacactactttcgattttgattatc 172  Q
    |||||||||  |||||| | || ||||||||| |||||| ||||||||||| ||| |||||||| ||||    
T  335842 gtgaaagggcaaagctttaatctttttggtggctgaaatcgaaatacactaattttgattttgactatc 335910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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