View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_high_26 (Length: 281)
Name: NF3001_high_26
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 25562743 - 25562479
Alignment:
| Q |
1 |
aatttgaaggagaactaaattcagaaaaccacaattgccagctcagctagcgaaatggcttggagagttgttgaacatgctgtgccacataaatgcccgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25562743 |
aatttgaaggagaactaaattcagaaaaccacaattgccagctcagctagcgaaatggcttggagagttgttgaacatgctgtgccacataaatgcccgg |
25562644 |
T |
|
| Q |
101 |
gaaagcaccatctcgaggtcctggtgagtccagttctgagttggaaggtgttgaaggaacattaccaactcctggaattccaacctctggagtttgtctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25562643 |
gaaagcaccatctcgaggtcctggtgagtccagttctgagttggaaggtgttgaaggaacattaccaactcctggaattccaacctctggagtttgtctg |
25562544 |
T |
|
| Q |
201 |
accactaaaggaaaaatata--tatacattcagtttctagtttctatgggttaagcattgatatg |
263 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25562543 |
accactaaaggaaaaatatatatatacattcagtttctagtttctatgggttaagcattgatatg |
25562479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 42603526 - 42603408
Alignment:
| Q |
53 |
aaatggcttggagagttgttgaacatgctgtgccacataaatgcccgggaaagcaccatctcgaggtcctggtgagtccagttctgagttggaaggtgtt |
152 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||| || || || ||||||||||| ||||| | |||||||||||||||||||||||||| |
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| T |
42603526 |
aaatggctaggagagttgttaaacatgctgtgccacataaatgcacgagagagtaccatctcgagttcctgatcagtccagttctgagttggaaggtgtt |
42603427 |
T |
|
| Q |
153 |
gaaggaacattaccaactc |
171 |
Q |
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||||||||||||| ||||| |
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| T |
42603426 |
gaaggaacattactaactc |
42603408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 15017947 - 15017850
Alignment:
| Q |
141 |
ttggaaggtgttgaaggaacattaccaactcctggaattccaacctctggagtttgtctgaccactaaaggaaaaatatatatacattcagtttctag |
238 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
15017947 |
ttggaaggtgttgaaggaacattaccaattcctagaattccaagctctagagtttgtctgaccactaaaggaaaaatatatatgcattgaatttctag |
15017850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 25560881 - 25560772
Alignment:
| Q |
125 |
tgagtccagttctgag--ttggaaggtgttgaaggaacattaccaactcctggaattccaacctctggagtttgtctgaccactaaaggaaaaatatata |
222 |
Q |
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|||||||||||||||| ||| ||||| ||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||| |||||||||| |
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| T |
25560881 |
tgagtccagttctgagagttgaaaggtattgaaggaacattactaacatctggaattccaagctctggagtttgtccgaccactaaagg-aaaatatata |
25560783 |
T |
|
| Q |
223 |
tacattcagtt |
233 |
Q |
| |
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| |||| |||| |
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|
| T |
25560782 |
tgcatttagtt |
25560772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 25560954 - 25560906
Alignment:
| Q |
15 |
ctaaattcagaaaaccacaattgccagctcagctagcgaaatggcttgg |
63 |
Q |
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||||||||||||||||||||| | ||||| ||||| |||||| |||||| |
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| T |
25560954 |
ctaaattcagaaaaccacaatggtcagcttagctaacgaaatcgcttgg |
25560906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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