View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_high_28 (Length: 275)
Name: NF3001_high_28
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 38 - 259
Target Start/End: Original strand, 30133799 - 30134016
Alignment:
| Q |
38 |
aacaatattcgtatttatttatatctcagcaaaacatacactaattagtccttccaccaaattcatattacaataaggacaacttactcaagaaaactgc |
137 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
30133799 |
aacaatattcgtatttatttatatctcaacaaa-catacactaatttgtccttccatcaaattcatattacattaaggacaacttagtcaaaaaaactgc |
30133897 |
T |
|
| Q |
138 |
tttaccttaattaactgcggatttgatctaattccataggcatagagagtaacaaagctatgctttaattattacaacaaatcccacaattgatatcttg |
237 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
30133898 |
tttactttaattaactgcggatttgatct---tccataggcatagaacgtaacaaagctatgctttaattattacaacaaaccccacaattgttatcttg |
30133994 |
T |
|
| Q |
238 |
tactcttcttttgaattataat |
259 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30133995 |
tactcttcttttgaattataat |
30134016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 38 - 259
Target Start/End: Original strand, 30135195 - 30135412
Alignment:
| Q |
38 |
aacaatattcgtatttatttatatctcagcaaaacatacactaattagtccttccaccaaattcatattacaataaggacaacttactcaagaaaactgc |
137 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
30135195 |
aacaatattcgtatttatttatatctcaacaaa-catacactaatttgtccttccatcaaattcatattacattaaggacaacttagtcaaaaaaactgc |
30135293 |
T |
|
| Q |
138 |
tttaccttaattaactgcggatttgatctaattccataggcatagagagtaacaaagctatgctttaattattacaacaaatcccacaattgatatcttg |
237 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
30135294 |
tttactttaattaactgcggatttgatct---tccataggcatagaacgtaacaaagctatgctttaattattacaacaaaccccacaattgttatcttg |
30135390 |
T |
|
| Q |
238 |
tactcttcttttgaattataat |
259 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30135391 |
tactcttcttttgaattataat |
30135412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 38 - 259
Target Start/End: Original strand, 30144746 - 30144963
Alignment:
| Q |
38 |
aacaatattcgtatttatttatatctcagcaaaacatacactaattagtccttccaccaaattcatattacaataaggacaacttactcaagaaaactgc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
30144746 |
aacaatattcgtatttatttatatctcaacaaa-catacactaatttgtccttccatcaaattcatattacattaaggacaacttagtcaaaaaaactgc |
30144844 |
T |
|
| Q |
138 |
tttaccttaattaactgcggatttgatctaattccataggcatagagagtaacaaagctatgctttaattattacaacaaatcccacaattgatatcttg |
237 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
30144845 |
tttactttaattaactgcggatttgatct---tccataggcatagaacgtaacaaagctatgctttaattattacaacaaaccccacaattgttatcttg |
30144941 |
T |
|
| Q |
238 |
tactcttcttttgaattataat |
259 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
30144942 |
tactcttcttttgaattataat |
30144963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 30130505 - 30130692
Alignment:
| Q |
52 |
ttatttatatctcagcaaaacatacactaattagtccttccaccaaattcatattacaataaggacaacttactcaagaaaactgctttaccttaattaa |
151 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
30130505 |
ttatttatatctcagcaaat-atacactaattagtccttccaccaaattcatattacaataaggacaacttagtct----------------ttaattaa |
30130587 |
T |
|
| Q |
152 |
ctgcggatttgatctaattccataggcatagagagtaacaaagctatgctttaattattacaacaaatcccacaattgatatcttgtactcttcttttga |
251 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
30130588 |
ctgcagatttgatct---tccataggcatagagagtaacaaagctatgctttaattattacaacaaaccccacaattgttatcttgtactcttcttttga |
30130684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 30055400 - 30055517
Alignment:
| Q |
1 |
tttttgaatattcagatagtattaattatacattttcaacaatattcgtatttatttatatctcagcaaaacatacactaattagtccttccaccaaatt |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |
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| T |
30055400 |
ttttttaatattgagatagtattaattatcggttttcaacaagattcgtatttatttatttctcagcaaa-catacactaattagtcctcccaccaaatt |
30055498 |
T |
|
| Q |
101 |
catattacaataaggacaa |
119 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
30055499 |
catattacaataaggacaa |
30055517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 30182899 - 30183025
Alignment:
| Q |
1 |
tttttgaatattcagatagtattaattatacattttcaacaatattcgtatttatttatatctcagcaaaacatacactaattagtccttccaccaaatt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||||| |||||||| ||||| ||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
30182899 |
ttttttaatattcagatagtattaattacagtttttcatcaatattcttatttttttatatcttctccat-catacactaattagtccttccaccaaatt |
30182997 |
T |
|
| Q |
101 |
catattacaataaggacaacttactcaa |
128 |
Q |
| |
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||||||||||||||||||| ||| |||| |
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| T |
30182998 |
catattacaataaggacaatttagtcaa |
30183025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 30130102 - 30130157
Alignment:
| Q |
5 |
tgaatattcagatagtattaattatacattttcaacaatattcgtatttatttata |
60 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
30130102 |
tgaatattcagatagtattaattataagttttcaacaatattcgtatttatttata |
30130157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 30055659 - 30055718
Alignment:
| Q |
169 |
ttccataggcatagagagtaacaaagctatgctttaattattacaacaaatcccacaattgata |
232 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| |
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|
| T |
30055659 |
ttccataggcatacagagtaacaaagctatgct----ttattccaacaaaccccacaattgata |
30055718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 30048808 - 30048840
Alignment:
| Q |
172 |
cataggcatagagagtaacaaagctatgcttta |
204 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
30048808 |
cataggcatagaaagtaacaaagctatgcttta |
30048840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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