View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_high_33 (Length: 246)
Name: NF3001_high_33
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 48597070 - 48597290
Alignment:
| Q |
18 |
aaataaataaatgagaatatcatatgcacaaatattattgttgattttttaacaatttttctatggaactaaatactatatattttttagatggcaattg |
117 |
Q |
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| T |
48597070 |
aaataaataaataagaatatcatatgcataaatattattgttgattttttaacaatttttctatggaactaaatactatatattatttagatggcaattg |
48597169 |
T |
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| Q |
118 |
caacaaaaggttggtagtgttaccacttaccaatgtaatcaaagttatttatttatcttttaccatgtatgtcatatctataacataaatagtagaaaat |
217 |
Q |
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| T |
48597170 |
caacaaaaggttggtagtg-------ttaccaatgtaatcaaaattatttatttatcttttatcttgtatgtcatatctataacataaatagtagaaaat |
48597262 |
T |
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| Q |
218 |
aaataaataattttgattggtgtcaaat |
245 |
Q |
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| T |
48597263 |
aaataaataaatttgattggtgtcaaat |
48597290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 48591668 - 48591710
Alignment:
| Q |
203 |
taaatagtagaaaataaataaataattttgattggtgtcaaat |
245 |
Q |
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| T |
48591668 |
taaatagtagaaaataaataaataattttgattggtgtcaaat |
48591710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 48601363 - 48601405
Alignment:
| Q |
203 |
taaatagtagaaaataaataaataattttgattggtgtcaaat |
245 |
Q |
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| T |
48601363 |
taaatagtagaaaataaataaataattttgattggtgtcaaat |
48601405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 26532813 - 26532768
Alignment:
| Q |
198 |
taacataaatagtagaaaataaataaataattttgattggtgtcaa |
243 |
Q |
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| T |
26532813 |
taacataagtagtagaagacaaataaataattttgattggtgtcaa |
26532768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 15882690 - 15882735
Alignment:
| Q |
198 |
taacataaatagtagaaaataaataaataattttgattggtgtcaa |
243 |
Q |
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||||||||||| ||||| | |||||||| ||||||||||||||||| |
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| T |
15882690 |
taacataaataatagaagacaaataaatgattttgattggtgtcaa |
15882735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 49197444 - 49197488
Alignment:
| Q |
196 |
tataacataaatagtagaaaataaataaataattttgattggtgt |
240 |
Q |
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| T |
49197444 |
tataacataaatagtggaagataaatatatgattttgattggtgt |
49197488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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