View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3001_high_34 (Length: 245)
Name: NF3001_high_34
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 43232410 - 43232325
Alignment:
| Q |
143 |
ttataagactgcagctttaagaaggaaaaaggagaaataaaaacataacacaaacttataaataaacggtatgtatacaagaaaac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
43232410 |
ttataagactgcagctttaagaaggaaaaaagagaaataaaaacataacacaaacttataaataaagggtatgtatacaacaaaac |
43232325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 43233103 - 43233060
Alignment:
| Q |
78 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43233103 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
43233060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University