View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_high_35 (Length: 242)
Name: NF3001_high_35
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_35 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 39624823 - 39625045
Alignment:
| Q |
17 |
atgtctaatagtaatgtgatcttccgatttaatattaaaagttgttgatccataactaaacacaacaaattgtaaaacctagattctttaattgactaac |
116 |
Q |
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| T |
39624823 |
atgtctaatagtaatgtgatcttccgatttaatattaaaagttgttgatccataactaaacacaacaaatggtaaaacctagattcttt---tgactaac |
39624919 |
T |
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| Q |
117 |
taattatttctgtatgttgcatgaattacgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagc |
216 |
Q |
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| T |
39624920 |
taattatttctgtatgttgcatgaattacgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagc |
39625019 |
T |
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| Q |
217 |
tgcttaggagccgacgaacctgctac |
242 |
Q |
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| T |
39625020 |
tgcttaggagccgacacacctgctac |
39625045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 39634373 - 39634595
Alignment:
| Q |
17 |
atgtctaatagtaatgtgatcttccgatttaatattaaaagttgttgatccataactaaacacaacaaattgtaaaacctagattctttaattgactaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
39634373 |
atgtctaatagtaatgtgatcttccgatttaatattaaaagttgttgatccataactaaacacaacaaatggtaaaacctagattcttt---tgactaac |
39634469 |
T |
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| Q |
117 |
taattatttctgtatgttgcatgaattacgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagc |
216 |
Q |
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| T |
39634470 |
taattatttctgtatgttgcatgaattacgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagc |
39634569 |
T |
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| Q |
217 |
tgcttaggagccgacgaacctgctac |
242 |
Q |
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| T |
39634570 |
tgcttaggagccgacacacctgctac |
39634595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 40276231 - 40276329
Alignment:
| Q |
133 |
ttgcatgaattacgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgac |
231 |
Q |
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|||||||||| || ||||||| |||||||||| ||||||| |||||||||||||| |||||||||||| |||||||| || | ||||||||||||||| |
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| T |
40276231 |
ttgcatgaatcacatacctcagattcaaggcacgtacaagtagattcaatacaagcctcaagagctttaaactcaaaaggtaattgcttaggagccgac |
40276329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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