View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_high_38 (Length: 238)
Name: NF3001_high_38
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6117234 - 6117454
Alignment:
| Q |
18 |
cttgctcacctcacactcctcatattccaaaacaaaggaatataactataaaagtttataatagtggttaaaaaatacgtcttagattcaaacatttcga |
117 |
Q |
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| T |
6117234 |
cttgctcatctcacactcctcatattccaaaacaaaggaatataactataaaagtttataatagtggttaaaaaatacgtcttagattcaaacattttaa |
6117333 |
T |
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| Q |
118 |
gttcgaactcagttaatattctaagattaagatcaatgtaaacttataccctttaaaccatgaagtattccgttggattcaaaaccatcttctcacccta |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6117334 |
gttcgaactccgttaatattctaagattaagatcaatgtaaatttataccctttaaaccatgaagtattccgttggattcaaaaccatcttctcacccta |
6117433 |
T |
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| Q |
218 |
aatatttttcatatgataaac |
238 |
Q |
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||||||||||||||||||||| |
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| T |
6117434 |
aatatttttcatatgataaac |
6117454 |
T |
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