View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_high_39 (Length: 237)
Name: NF3001_high_39
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10010561 - 10010339
Alignment:
| Q |
1 |
ttgcttcgtattgtgtagatatgtgttgagaaaatcaataatttcatgttaacctctttggtcttttgaaatgtagatatataggtcgattggattcggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
10010561 |
ttgcttcgtattgtgtagatatgtgttgagaaaatcaataatttcatgttaacctctttggtcttttgaaatgtagatatataggttgattggaatcggc |
10010462 |
T |
|
| Q |
101 |
ttctgttctcctttttctacaataaatgtgtaacatgcaattaacaaatttagttacataggatgcacggttattgcttttatttttgtccttatatagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
10010461 |
ttctgttctcctttttctacaataaatgtgtaacatgcaattaacaattttagttacataggatgcacggtaattgcttttatttttatccttatatagg |
10010362 |
T |
|
| Q |
201 |
ttgaatagaatccggtaaaatat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
10010361 |
ttgaatagaatccggtaaaatat |
10010339 |
T |
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