View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3001_high_41 (Length: 236)

Name: NF3001_high_41
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3001_high_41
NF3001_high_41
[»] chr2 (21 HSPs)
chr2 (17-233)||(41932971-41933200)
chr2 (133-236)||(15505513-15505616)
chr2 (132-218)||(1334936-1335022)
chr2 (130-224)||(34904834-34904928)
chr2 (139-236)||(9448988-9449084)
chr2 (132-218)||(19890241-19890327)
chr2 (162-226)||(14295626-14295690)
chr2 (132-224)||(20064879-20064971)
chr2 (138-226)||(37993052-37993140)
chr2 (133-211)||(45076187-45076264)
chr2 (132-201)||(18223082-18223151)
chr2 (123-211)||(2888867-2888955)
chr2 (132-200)||(3882584-3882652)
chr2 (132-236)||(38533903-38534005)
chr2 (159-223)||(43228872-43228936)
chr2 (132-215)||(24762769-24762852)
chr2 (157-236)||(31452380-31452459)
chr2 (132-201)||(37313738-37313805)
chr2 (131-172)||(37082298-37082339)
chr2 (132-172)||(5962063-5962103)
chr2 (176-236)||(7673206-7673266)
[»] chr8 (26 HSPs)
chr8 (130-236)||(33013012-33013117)
chr8 (132-236)||(28207592-28207696)
chr8 (130-224)||(2258137-2258231)
chr8 (133-226)||(9024457-9024550)
chr8 (131-236)||(27801260-27801365)
chr8 (137-236)||(13028103-13028201)
chr8 (132-218)||(1369911-1369997)
chr8 (132-218)||(3146005-3146090)
chr8 (140-226)||(17081415-17081501)
chr8 (158-236)||(33949584-33949662)
chr8 (130-219)||(16723246-16723335)
chr8 (125-206)||(36348553-36348634)
chr8 (159-235)||(12684529-12684605)
chr8 (165-224)||(1135162-1135221)
chr8 (132-219)||(20279606-20279693)
chr8 (132-219)||(21066233-21066320)
chr8 (132-218)||(42636418-42636504)
chr8 (134-195)||(7513370-7513431)
chr8 (124-204)||(12782737-12782817)
chr8 (159-218)||(167896-167955)
chr8 (131-226)||(39691158-39691253)
chr8 (134-200)||(12002237-12002303)
chr8 (159-236)||(4384169-4384246)
chr8 (177-226)||(24695760-24695809)
chr8 (132-200)||(11533200-11533268)
chr8 (132-203)||(39093052-39093124)
[»] chr1 (30 HSPs)
chr1 (127-236)||(39914639-39914748)
chr1 (160-236)||(38748755-38748831)
chr1 (128-225)||(34232752-34232849)
chr1 (130-235)||(39150548-39150653)
chr1 (134-228)||(4851287-4851380)
chr1 (132-236)||(2864111-2864214)
chr1 (132-236)||(39156229-39156333)
chr1 (139-226)||(3982240-3982327)
chr1 (132-235)||(48022388-48022491)
chr1 (160-229)||(8794412-8794481)
chr1 (123-203)||(4771981-4772061)
chr1 (134-218)||(7212745-7212827)
chr1 (132-219)||(30822827-30822912)
chr1 (164-236)||(44829272-44829344)
chr1 (135-206)||(39973863-39973934)
chr1 (134-172)||(17112673-17112711)
chr1 (132-226)||(32562397-32562490)
chr1 (134-236)||(45640517-45640619)
chr1 (175-224)||(18432999-18433048)
chr1 (159-236)||(42791176-42791253)
chr1 (132-200)||(16113887-16113955)
chr1 (135-235)||(47187856-47187955)
chr1 (137-211)||(36621908-36621980)
chr1 (135-225)||(1048715-1048803)
chr1 (164-226)||(26327796-26327858)
chr1 (132-203)||(40570657-40570729)
chr1 (132-182)||(42469218-42469268)
chr1 (142-235)||(8365481-8365574)
chr1 (138-214)||(27542834-27542910)
chr1 (129-169)||(29204072-29204112)
[»] chr4 (30 HSPs)
chr4 (134-226)||(7852588-7852680)
chr4 (134-236)||(27953075-27953176)
chr4 (127-236)||(45900183-45900292)
chr4 (123-236)||(35777733-35777846)
chr4 (132-236)||(37138196-37138299)
chr4 (123-218)||(20394597-20394692)
chr4 (132-236)||(8297839-8297943)
chr4 (155-219)||(31174702-31174766)
chr4 (135-218)||(41462020-41462103)
chr4 (137-218)||(50341919-50341998)
chr4 (132-218)||(51834882-51834968)
chr4 (133-226)||(42370358-42370450)
chr4 (132-191)||(47560594-47560653)
chr4 (160-235)||(47995772-47995847)
chr4 (164-218)||(50426989-50427043)
chr4 (132-236)||(7444419-7444524)
chr4 (135-200)||(23136577-23136642)
chr4 (133-226)||(24175443-24175535)
chr4 (134-226)||(39195771-39195862)
chr4 (176-224)||(49084447-49084495)
chr4 (175-219)||(51736365-51736409)
chr4 (159-218)||(25115315-25115374)
chr4 (127-218)||(49400576-49400666)
chr4 (176-218)||(23605979-23606021)
chr4 (132-206)||(24981760-24981834)
chr4 (131-203)||(38945087-38945159)
chr4 (132-172)||(23230334-23230374)
chr4 (159-223)||(23689877-23689941)
chr4 (176-224)||(37440838-37440886)
chr4 (134-194)||(54700918-54700978)
[»] chr3 (19 HSPs)
chr3 (126-226)||(46093595-46093695)
chr3 (159-236)||(47638890-47638967)
chr3 (134-218)||(48180223-48180307)
chr3 (132-228)||(37708405-37708501)
chr3 (176-224)||(11132611-11132659)
chr3 (180-226)||(29083944-29083990)
chr3 (157-230)||(39551896-39551968)
chr3 (131-219)||(42846057-42846146)
chr3 (132-200)||(45757897-45757965)
chr3 (133-218)||(49362406-49362490)
chr3 (131-226)||(25299081-25299176)
chr3 (132-170)||(11623573-11623611)
chr3 (130-200)||(24313517-24313587)
chr3 (135-197)||(39651904-39651966)
chr3 (125-195)||(52308977-52309047)
chr3 (133-194)||(23642718-23642779)
chr3 (185-226)||(26143091-26143132)
chr3 (137-226)||(47040073-47040162)
chr3 (159-216)||(52249321-52249378)
[»] scaffold0036 (1 HSPs)
scaffold0036 (125-235)||(62560-62670)
[»] chr5 (26 HSPs)
chr5 (134-218)||(15720037-15720121)
chr5 (132-235)||(8208147-8208250)
chr5 (160-218)||(18229654-18229712)
chr5 (129-218)||(16667344-16667433)
chr5 (133-218)||(30501192-30501277)
chr5 (133-218)||(30541535-30541620)
chr5 (132-235)||(9276615-9276717)
chr5 (132-215)||(41583511-41583594)
chr5 (134-224)||(112532-112622)
chr5 (132-218)||(34032142-34032228)
chr5 (132-236)||(30104772-30104876)
chr5 (140-236)||(40530469-40530565)
chr5 (158-236)||(13480012-13480091)
chr5 (132-226)||(34899180-34899272)
chr5 (132-218)||(2918649-2918735)
chr5 (132-218)||(7719172-7719258)
chr5 (157-226)||(32017462-32017531)
chr5 (176-236)||(8221134-8221194)
chr5 (134-218)||(23117279-23117362)
chr5 (124-203)||(17098253-17098332)
chr5 (134-201)||(24041092-24041158)
chr5 (137-219)||(3140787-3140869)
chr5 (164-226)||(18963812-18963874)
chr5 (129-201)||(967068-967139)
chr5 (133-169)||(39177651-39177687)
chr5 (131-211)||(39382504-39382583)
[»] chr7 (20 HSPs)
chr7 (131-236)||(27123241-27123346)
chr7 (131-236)||(28770444-28770549)
chr7 (155-224)||(39321028-39321097)
chr7 (132-236)||(28663173-28663275)
chr7 (157-228)||(35731280-35731351)
chr7 (134-218)||(21727458-21727542)
chr7 (170-236)||(3692883-3692949)
chr7 (132-219)||(25886138-25886225)
chr7 (159-229)||(7968600-7968670)
chr7 (126-236)||(35496607-35496717)
chr7 (132-218)||(44537309-44537395)
chr7 (135-219)||(18801012-18801095)
chr7 (132-224)||(29711539-29711631)
chr7 (176-224)||(44592878-44592926)
chr7 (176-207)||(26239604-26239635)
chr7 (176-226)||(37158400-37158450)
chr7 (132-218)||(43234758-43234844)
chr7 (123-200)||(34299813-34299890)
chr7 (132-169)||(47507578-47507615)
chr7 (123-171)||(19915034-19915081)
[»] chr6 (16 HSPs)
chr6 (135-219)||(11720929-11721013)
chr6 (132-218)||(19293505-19293591)
chr6 (134-226)||(17215727-17215819)
chr6 (157-236)||(1840976-1841055)
chr6 (137-208)||(30739572-30739643)
chr6 (131-201)||(30509283-30509353)
chr6 (132-195)||(9301876-9301939)
chr6 (157-223)||(3766270-3766336)
chr6 (162-218)||(2864876-2864930)
chr6 (127-219)||(26669330-26669420)
chr6 (176-224)||(23399122-23399170)
chr6 (132-203)||(35229260-35229331)
chr6 (132-226)||(15588623-15588717)
chr6 (132-189)||(31854762-31854819)
chr6 (135-224)||(34232001-34232090)
chr6 (132-172)||(21202988-21203028)
[»] scaffold0119 (1 HSPs)
scaffold0119 (127-219)||(1373-1463)
[»] scaffold0003 (1 HSPs)
scaffold0003 (157-226)||(103693-103762)
[»] scaffold1444 (1 HSPs)
scaffold1444 (176-224)||(978-1026)
[»] scaffold0009 (1 HSPs)
scaffold0009 (159-211)||(189064-189116)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 41932971 - 41933200
Alignment:
Q  17 gtcttagccgttaagaagttgactcatatgccacaaaaatgaagttcaatttatgttgctaacttcgtgatcttt---------aggtgatccgtaaaga 107  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||         ||||||||||||||||    
T  41932971 gtcttaggcgttaagaagttgactcatatgccacaaaaacgaagttcaatttatgttgctaacttcatgatctttttctttaggaggtgatccgtaaaga 41933070  T
Q  108 tgagttaaatttgatataaaaaatgggtcttgttaacgagtgtctt----cgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagt 203  Q
     |||||||||||||||||||||||| |||||||||||||||||||     |||| |||| ||||| |||||||||||||||||||||||||| |||||||    
T  41933071 agagttaaatttgatataaaaaatgagtcttgttaacgagtgtctgtctccgagacactgtttaaacatatcaaatttagcaattattcttttaaaaagt 41933170  T
Q  204 taactattacaatttttaatgcactcagta 233  Q
     ||||||||||||||| |||||||||||||    
T  41933171 caactattacaattttcaatgcactcagta 41933200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 15505513 - 15505616
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagt 232  Q
    ||||| |||||||||||||||| |  ||||||||||| || |||||||||  ||||||||||||||||||| |||||||| |||||| ||| || ||| |    
T  15505513 ggtctcgttaacgagtgtcttcaacacactctttaagtatttcaaatttaataattattctttcaaaaagtaaactattataattttcaatacattcaat 15505612  T
Q  233 acac 236  Q
    ||||    
T  15505613 acac 15505616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 1335022 - 1334936
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||||||| ||| || ||||||||||||||||  ||||||||  ||||||||||| ||||| | ||||||||||||||    
T  1335022 gggtcttgttaacgagtatctccggggcactctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaattt 1334936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 34904928 - 34904834
Alignment:
Q  130 atgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    ||||||||||||||||||||   ||  ||||||||||||| || ||| |||||| ||||||||||| ||||| | ||||||||||||||||||||    
T  34904928 atgggtcttgttaacgagtgctctctgggcactctttaagtatctcatatttagtaattattcttttaaaaaatcaactattacaatttttaatg 34904834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 9449084 - 9448988
Alignment:
Q  139 gttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||| |||||||| |||||||||||||||  |||||||||| ||||||||||| ||||| | |||||||| |||||| ||| || ||| |||||    
T  9449084 gttaacgaatgtcttcggggcactctttaagcaactcaaatttagtaattattcttttaaaaa-tcaactattataattttcaatacattcaatacac 9448988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 19890327 - 19890241
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||| |||||||||||||| | || || ||| |||||||||   |||||||| ||||||||||| ||||||| ||||||||||||||    
T  19890327 gggttttgttaacgagtgtttccggggtactatttaagcatcctaaatttagtaattattcttttaaaaagtcaactattacaattt 19890241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 14295626 - 14295690
Alignment:
Q  162 tctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||| ||  ||||||||| ||||||||||| |||| |||||||||||||||||| ||||||    
T  14295626 tctttaagaatcccaaatttagtaattattcttttaaaaggttaactattacaattttcaatgca 14295690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 20064879 - 20064971
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||||||||||||| ||    ||||||||||||| ||   |||| ||| ||||||||||| ||||||| ||||||||||||||| ||||    
T  20064879 gggtcttgttaacgagtgcctctagggcactctttaaggatcctaaatatagtaattattcttttaaaaagtcaactattacaattttcaatg 20064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 37993052 - 37993140
Alignment:
Q  138 tgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||||||||| | || ||||||| |||   |||||||  || |||||||||||||| | ||||||||||||||| ||||||    
T  37993052 tgttaacgagtgtcttcgggacattctttaaacattctaaatttaataactattctttcaaaaaatcaactattacaattttcaatgca 37993140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 45076264 - 45076187
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactatt 211  Q
    |||||| ||||||||||||  ||||||||||||||| ||||  ||| | |||||||||||||| |||||||||| ||||    
T  45076264 ggtcttattaacgagtgtcc-cgaggcactctttaaacatactaaaataagcaattattctttaaaaaagttaaatatt 45076187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 18223082 - 18223151
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaa 201  Q
    |||| ||||||||||||||||||| | |||| |||||||||| ||||   |||||||||||||| |||||    
T  18223082 gggttttgttaacgagtgtcttcgggacactttttaagcataccaaaacaagcaattattctttaaaaaa 18223151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 2888867 - 2888955
Alignment:
Q  123 ataaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactatt 211  Q
    ||||||||||||||||||||| ||||| |  | || |||||||||||||  ||||| || | ||||||| ||| |||||||||| ||||    
T  2888867 ataaaaaatgggtcttgttaatgagtgccaccaagacactctttaagcacttcaaaatttgtaattattttttaaaaaagttaaatatt 2888955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 3882584 - 3882652
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaa 200  Q
    |||||||||||||||||| | ||| ||||||||||||||||   ||| | |||||||||||||| ||||    
T  3882584 gggtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaa 3882652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 38534005 - 38533903
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||||||||||||||||| | ||| | ||| |||||||||| |||||||||| ||||||| ||| ||| ||| |||||||  ||||| ||||||| |||     
T  38534005 gggtcttgttaacgagtgccctcg-gacaccctttaagcatctcaaatttagtaattatt-ttttaaatagtcaactattgtaatttctaatgcattcaa 38533908  T
Q  232 tacac 236  Q
    |||||    
T  38533907 tacac 38533903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 43228936 - 43228872
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaat 223  Q
    |||| |||||| || | ||||||||||||||||| || |||||||||| ||||| ||||||||||    
T  43228936 cactttttaaggatctaaaatttagcaattattcctttaaaaagttaattattataatttttaat 43228872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 24762852 - 24762769
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaa 215  Q
    |||||||||||||||||| ||||  | ||||||||||| ||  ||||||||| || ||||| || ||||||| || ||||||||    
T  24762852 gggtcttgttaacgagtgccttcaggtcactctttaaggatcccaaatttagaaaatattccttaaaaaagtcaaatattacaa 24762769  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 31452459 - 31452380
Alignment:
Q  157 ggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||| ||||||| |||  ||| ||||| ||||||||||| ||||||| ||| ||||||||||| |||||| ||| |||||    
T  31452459 ggcagtctttaaacatcccaagtttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacac 31452380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 37313805 - 37313738
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaa 201  Q
    ||||||||||||||||||||||||||  ||| ||||||||| | ||||| || |||| |||||| |||||    
T  37313805 gggtcttgttaacgagtgtcttcgag--actttttaagcattttaaattaagtaatttttctttaaaaaa 37313738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 37082339 - 37082298
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcat 172  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  37082339 tgggtcttgttaacgagtgtcttcgggtcactttttaagcat 37082298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 5962103 - 5962063
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcat 172  Q
    |||||||||||||||||| || |||| ||||||||||||||    
T  5962103 gggtcttgttaacgagtgcctccgagacactctttaagcat 5962063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 7673206 - 7673266
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||||||||||||| |  |||||| ||||||||||||||| ||| || | |||||||    
T  7673206 aaatttagcaattattctctttaaaagtcaactattacaattttcaatacatttagtacac 7673266  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 33013012 - 33013117
Alignment:
Q  130 atgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactc 229  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||  |||| ||||    
T  33013012 atgggtcttgttaacgagtgttttcgagg-actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactc 33013110  T
Q  230 agtacac 236  Q
    | |||||    
T  33013111 aatacac 33013117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 28207592 - 28207696
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||||||||||||||||| |  |||| ||||||||||||||  |||||||| |||| ||||||| ||||||| ||||||||||||||  |||||| |||     
T  28207592 gggtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattcaa 28207691  T
Q  232 tacac 236  Q
    |||||    
T  28207692 tacac 28207696  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 2258231 - 2258137
Alignment:
Q  130 atgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    ||||||||||||||||||| |   || ||||||||||||||||  ||||||||  ||||||||||| ||||||||||  ||||||||||||||||    
T  2258231 atgggtcttgttaacgagttttcccgtggcactctttaagcatcccaaatttaataattattcttttaaaaagttaatcattacaatttttaatg 2258137  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 9024457 - 9024550
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||||||| ||||| || |||  ||||||||||| | | ||||||||| ||||||||||||||||| | |||||||||||||||| |||||    
T  9024457 ggtcttgttaatgagtgcctccgaaacactctttaagaaaaccaaatttagtaattattctttcaaaaaatcaactattacaattttttatgca 9024550  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 27801365 - 27801260
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactca 230  Q
    ||||||||||||||||||| |  |  | |||||||||| |||   |||||||| ||||||||||| ||||||| ||||||||||||||| |||||| |||    
T  27801365 tgggtcttgttaacgagtgcccccatgacactctttaatcattctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattca 27801266  T
Q  231 gtacac 236  Q
     |||||    
T  27801265 ttacac 27801260  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 13028103 - 13028201
Alignment:
Q  137 ttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    ||||||||||||| |  |||||||||||||||||||   ||||||| |||||||||||| ||||| |  | |||||||||||| |||||||||| |||||    
T  13028103 ttgttaacgagtgccc-cgaggcactctttaagcattctaaatttatcaattattcttttaaaaaatctattattacaattttcaatgcactcaatacac 13028201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 1369997 - 1369911
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||| ||||||||||||| |||  || | |||||||||   |||||||||||||||||||| ||||||| |||||| |||||||    
T  1369997 gggtcttattaacgagtgtctccgatacattatttaagcatcctaaatttagcaattattcttttaaaaagtcaactatcacaattt 1369911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 3146005 - 3146090
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||| ||||||||||| | ||| | ||||||| ||||||  || |||||| ||||||||||| ||||||||||||||||||||||    
T  3146005 gggtctcgttaacgagtgccctcgggtcactctt-aagcatcccatatttagtaattattcttttaaaaagttaactattacaattt 3146090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 17081501 - 17081415
Alignment:
Q  140 ttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||| ||| |   |||||| || || |||||||||||||||||| ||| ||||||| |||||||||||||| |||||||    
T  17081501 ttaacgagtgtcatcgggaagctctttgaggatctcaaatttagcaattattttttaaaaaagtcaactattacaatttctaatgca 17081415  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 33949662 - 33949584
Alignment:
Q  158 gcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    ||||||||||||||||| |||||||| || |||| ||| ||||| | ||||||||||||||  |||||||||| |||||    
T  33949662 gcactctttaagcatattaaatttagtaagtattgttttaaaaattcaactattacaatttcaaatgcactcaatacac 33949584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 16723335 - 16723246
Alignment:
Q  130 atgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    |||||||||||||||||||| |  |  ||||||||||||||||  ||||||| | ||||||||||| ||||| | ||||| |||||||||    
T  16723335 atgggtcttgttaacgagtgaccccagggcactctttaagcatcccaaattttgtaattattcttttaaaaaatcaactaatacaatttt 16723246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 36348634 - 36348553
Alignment:
Q  125 aaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaa 206  Q
    |||| ||||||||||||||||| ||||| || |||||| |||||||| |  ||| | |||||||||||||| ||||||||||    
T  36348634 aaaacatgggtcttgttaacgaatgtctccggggcactttttaagcacactaaaataagcaattattctttaaaaaagttaa 36348553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 12684605 - 12684529
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtaca 235  Q
    ||||||||||||||  ||||||||  ||||||||||||||| | | |||||||||||||| ||||||| ||| ||||    
T  12684605 cactctttaagcattccaaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattaca 12684529  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 1135162 - 1135221
Alignment:
Q  165 ttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||| || ||||||| ||||||||||| ||||||| ||||||||||||||| ||||    
T  1135162 ttaagcatctcgaatttagtaattattcttttaaaaagtcaactattacaattttcaatg 1135221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 20279693 - 20279606
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    ||||||||||||| |||| |  || ||||||||||||||||   ||| | |||||||||||||||||||||| || |||| |||||||    
T  20279693 gggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaatttt 20279606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 21066320 - 21066233
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    ||||||||||||| |||| |  || ||||||||||||||||   ||| | |||||||||||||||||||||| || |||| |||||||    
T  21066320 gggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaatttt 21066233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 42636504 - 42636418
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||||||| |||||    || ||||||||||||||||  ||||||||| ||||||| ||  ||||||| ||||||||||||||    
T  42636504 gggtcttgttaaggagtgctcccggggcactctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaattt 42636418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 7513431 - 7513370
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattcttt 195  Q
    |||||||||||||||||   || ||||||||||||||||||||||   ||||||||||||||    
T  7513431 gtcttgttaacgagtgttcccggggcactctttaagcatatcaaaacaagcaattattcttt 7513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 12782737 - 12782817
Alignment:
Q  124 taaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagtt 204  Q
    ||||||| ||||||||||||||| ||||| ||   |||||||||||||||  ||| |  ||||||||||||| ||||||||    
T  12782737 taaaaaaagggtcttgttaacgaatgtctccggaacactctttaagcatactaaaatatgcaattattctttaaaaaagtt 12782817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 167955 - 167896
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||| || |||||||||  ||||||||||| ||||||| |||||||| |||||    
T  167955 cactctttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataattt 167896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 39691253 - 39691158
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||| ||||||||||||| | ||||| ||||||||||||||  || ||| |  ||||||||||| ||||||| || || | ||||||| ||||||    
T  39691253 tgggttttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgca 39691158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 12002237 - 12002303
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaa 200  Q
    ||||||||||||||| || ||| ||||||||||||| |||  ||||| || ||||||||||| ||||    
T  12002237 gtcttgttaacgagtatcctcggggcactctttaagtatactaaattaagtaattattctttaaaaa 12002303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 4384246 - 4384169
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||||||||    |||||||| ||||||||||| ||||| | ||||||||||||||  |||||| ||| |||||    
T  4384246 cactctttaagcaccctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacac 4384169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 24695760 - 24695809
Alignment:
Q  177 aatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||| ||||||| ||| ||||||| |||||||||||||| |||||||    
T  24695760 aatttagtaattattattttaaaaagtcaactattacaatttctaatgca 24695809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 11533200 - 11533268
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaa 200  Q
    ||||||||||||||||||| |||| | |||||||||| ||| | ||||| |  ||||||||||| ||||    
T  11533200 gggtcttgttaacgagtgttttcgggacactctttaaacatgttaaattaataaattattctttaaaaa 11533268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 39093052 - 39093124
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaa-tttagcaattattctttcaaaaagt 203  Q
    ||||||||||||||||||||  || || |||||||||||||| ||||    |||||||||||||| |||||||    
T  39093052 gggtcttgttaacgagtgtccccggggtactctttaagcataccaaacaaaagcaattattctttaaaaaagt 39093124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 39914748 - 39914639
Alignment:
Q  127 aaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||||||||||||||  | || | ||||||||||||||| |||||||| ||||| |||||| ||||||| ||||||||||||||| ||||||    
T  39914748 aaaatgggtcttgttaacgagtgcttccgggacactctttaagcataccaaatttaacaattgttcttttaaaaagtcaactattacaattttcaatgca 39914649  T
Q  227 ctcagtacac 236  Q
    |||| |||||    
T  39914648 ctcaatacac 39914639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 38748831 - 38748755
Alignment:
Q  160 actctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||| |||||||||| |||||    
T  38748831 actctttaagcataccaaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacac 38748755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 34232849 - 34232752
Alignment:
Q  128 aaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgc 225  Q
    ||||||||||||||||||||||    || | ||||||||||||||    ||||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  34232849 aaatgggtcttgttaacgagtgctcacgggacactctttaagcatccttaatttagcaattattcttttaaaaagtcaactattacaattttcaatgc 34232752  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 39150548 - 39150653
Alignment:
Q  130 atgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactc 229  Q
    |||||||||||||||||||| |  || ||||||||||||||||   |||||||| ||||||||||  ||||||| ||||||||||||||  |||||| ||    
T  39150548 atgggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattc 39150647  T
Q  230 agtaca 235  Q
    | ||||    
T  39150648 aataca 39150653  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 4851380 - 4851287
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcact 228  Q
    |||||||||||||||| || || | |||||||||||||| |||| ||||  ||||||||||| ||||||| ||||||||||||||  ||||||||    
T  4851380 gtcttgttaacgagtgcctccgggacactctttaagcatgtcaattttaaaaattattcttt-aaaaagtcaactattacaatttcaaatgcact 4851287  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 2864111 - 2864214
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    ||||||||||||||||||||  || | |||||||||| |||  || |||||| ||||||||||| ||||||| ||||||||||||||  |||||| |||     
T  2864111 gggtcttgttaacgagtgtccccgggacactctttaaacatcccatatttaggaattattcttt-aaaaagtcaactattacaatttccaatgcattcaa 2864209  T
Q  232 tacac 236  Q
    |||||    
T  2864210 tacac 2864214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 39156229 - 39156333
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||||||||||||||||| |   ||| ||||||||||||||   |||||||| ||||||||||| ||||||| ||||| ||||||||  |||||| |||     
T  39156229 gggtcttgttaacgagtgcccctgagacactctttaagcatcaaaaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattcaa 39156328  T
Q  232 tacac 236  Q
    |||||    
T  39156329 tacac 39156333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 3982240 - 3982327
Alignment:
Q  139 gttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||||||| || |||| ||||||||||  ||||||||||||| ||||||| ||  ||||||| |||||||| ||||| |||||||    
T  3982240 gttaacgagtgcctccgagacactctttaaaaatatcaaatttagtaattatttttagaaaaagtcaactattataatttataatgca 3982327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 48022491 - 48022388
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||||||||||||||||| |   | || |||||||||||||  || |||||| ||||||| ||| ||||||||||||||| ||||||| |||||| |||     
T  48022491 gggtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcattcaa 48022392  T
Q  232 taca 235  Q
    ||||    
T  48022391 taca 48022388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 8794412 - 8794481
Alignment:
Q  160 actctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactc 229  Q
    |||||||||||||   |||||||| ||||||||||| ||||||| |||||||| |||||| |||||||||    
T  8794412 actctttaagcatcctaaatttagtaattattcttttaaaaagtcaactattataattttcaatgcactc 8794481  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 4771981 - 4772061
Alignment:
Q  123 ataaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagt 203  Q
    |||||||  |||| ||||||||||||| || || ||||||||||||||||| |||||  |||||||||| ||| |||||||    
T  4771981 ataaaaatagggttttgttaacgagtgcctccggggcactctttaagcataccaaatgaagcaattatttttttaaaaagt 4772061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 7212745 - 7212827
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||||||||  |||  ||||||||||| || |||||||||| |||||| |||| ||||||||||| ||||||||||    
T  7212745 gtcttgttaacgagtgtcc-cgat-cactctttaagtatctcaaatttagtaattatacttttaaaaagttaacaattacaattt 7212827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 30822912 - 30822827
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    ||||||||||||||||| ||  || | |||| |||||| || |||||||||| ||||||||| | |||||||||| ||||||||||||    
T  30822912 gggtcttgttaacgagtatc--cgggacactttttaaggatttcaaatttagtaattattctcttaaaaagttaattattacaatttt 30822827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 44829272 - 44829344
Alignment:
Q  164 tttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||||  ||||||||| ||||||||||| |||| || ||||||||||||||||||| || ||| |||||    
T  44829272 tttaagcatcccaaatttagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacac 44829344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 39973863 - 39973934
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaa 206  Q
    |||||||||||||||||| || ||||||||||||||||   ||||| || ||||||||||| |||| |||||    
T  39973863 tcttgttaacgagtgtctccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaa 39973934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 17112673 - 17112711
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcat 172  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17112673 gtcttgttaacgagtgccttcgaggcactctttaagcat 17112711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 32562490 - 32562397
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||||||||| |||| |  |||| ||||||||||| || | |||||||| ||||||| ||| ||||| | ||||||||||||||| ||||||    
T  32562490 gggtcttgttaacaagtg-caccgagacactctttaagaatctaaaatttagtaattattattttaaaaattcaactattacaattttcaatgca 32562397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 45640517 - 45640619
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagta 233  Q
    |||| |||||||||||||| || | |||| || ||||||  ||||||||  || |||||||||||||||| || ||||| |||||| |||||| ||| ||    
T  45640517 gtctcgttaacgagtgtctccgggacacttttaaagcatcccaaatttaagaactattctttcaaaaagtcaattattataattttcaatgcattcatta 45640616  T
Q  234 cac 236  Q
    |||    
T  45640617 cac 45640619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 18433048 - 18432999
Alignment:
Q  175 caaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    ||||||||| ||||||||||| |||| ||||||| |||||||||||||||    
T  18433048 caaatttagtaattattcttttaaaatgttaactgttacaatttttaatg 18432999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 42791253 - 42791176
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||||||||| | ||||||| |||||||| ||| ||||||| |||||| || ||||| |||||| ||| |||||    
T  42791253 cactctttaagcatcttaaatttaacaattatttttttaaaaagtcaactatcactattttaaatgcattcaatacac 42791176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 16113887 - 16113955
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaa 200  Q
    |||||||||||||||||| || || |||||||||||||||||  | ||| || ||||||| ||||||||    
T  16113887 gggtcttgttaacgagtgcctccggggcactctttaagcatactatattaagtaattattttttcaaaa 16113955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 47187955 - 47187856
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtac 234  Q
    |||||| ||||||||||| || | ||||||||||||||  ||||||||| |||||||| || ||||| | |||||||| |||||  |||||| ||| |||    
T  47187955 tcttgtcaacgagtgtctccg-gacactctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaatac 47187857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 36621908 - 36621980
Alignment:
Q  137 ttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactatt 211  Q
    |||||||||| ||||| |||  |||||||||| ||| ||||| | |||||||||||||| |||||||||| ||||    
T  36621908 ttgttaacgaatgtctccga--cactctttaaacatttcaaaataagcaattattctttaaaaaagttaaatatt 36621980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 1048803 - 1048715
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgc 225  Q
    ||||||||| |||||| |||  ||||||||||||||||| |||||| |  ||||||||||| |||||||||| || | ||||||| |||||    
T  1048803 tcttgttaatgagtgt-ttcagggcactctttaagcataccaaattaaaaaattattcttt-aaaaagttaaatagttcaattttcaatgc 1048715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 26327796 - 26327858
Alignment:
Q  164 tttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||| ||| |||||||||  ||||||||||| ||||| | ||||||||||||||| ||||||    
T  26327796 tttaaacatttcaaatttaaaaattattctttaaaaaactaaactattacaattttcaatgca 26327858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 40570657 - 40570729
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatc--aaatttagcaattattctttcaaaaagt 203  Q
    |||||||||||||||||| |  || |||||||||||||| ||||  ||| |||||||||||||||| |||||||    
T  40570657 gggtcttgttaacgagtgcccccggggcactctttaagc-tatccaaaaattagcaattattctttaaaaaagt 40570729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 42469218 - 42469268
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaattta 182  Q
    |||| |||||||||||||  ||||| ||||||||||||||| |||||||||    
T  42469218 gggttttgttaacgagtgctttcgaagcactctttaagcatttcaaattta 42469268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 8365481 - 8365574
Alignment:
Q  142 aacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtaca 235  Q
    ||||||||||   |||||||||||||| |||   |||||||  ||||||||||| ||||| | |||||||||||| || |||||| ||| ||||    
T  8365481 aacgagtgtcccagaggcactctttaaacatcctaaatttaataattattcttttaaaaaatcaactattacaatcttcaatgcattcaataca 8365574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 27542834 - 27542910
Alignment:
Q  138 tgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattaca 214  Q
    |||||||||||  || ||||| |||||||||| ||| ||||||||  || |||||||| ||||||| || |||||||    
T  27542834 tgttaacgagtacctccgaggtactctttaaggataccaaatttaaaaaatattctttaaaaaagtcaaatattaca 27542910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 29204112 - 29204072
Alignment:
Q  129 aatgggtcttgttaacgagtgtcttcgaggcactctttaag 169  Q
    ||||||||||||||||||||||| |  ||||||||||||||    
T  29204112 aatgggtcttgttaacgagtgtccttaaggcactctttaag 29204072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 7852680 - 7852588
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||| ||||||||||||||||||| ||||||||||||||   |||||||| ||||||||||| ||||| ||||||||||||||||| ||||||    
T  7852680 gtctcgttaacgagtgtcttcgagacactctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgca 7852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 27953176 - 27953075
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagta 233  Q
    ||||||||||||||||||| ||  ||||||||||||||| ||||||||||  |||||| ||| ||||||||||||||||||||||| |||||| ||| ||    
T  27953176 gtcttgttaacgagtgtctccggagcactctttaagcatctcaaatttag-tattattattttaaaaagttaactattacaattttcaatgcattcaata 27953078  T
Q  234 cac 236  Q
    |||    
T  27953077 cac 27953075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 45900292 - 45900183
Alignment:
Q  127 aaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||   |||||||||||||||||||| | ||||| |||||| |||||||  ||||||    
T  45900292 aaaatgggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgca 45900193  T
Q  227 ctcagtacac 236  Q
     ||| |||||    
T  45900192 ttcaatacac 45900183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 35777846 - 35777733
Alignment:
Q  123 ataaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaa 222  Q
    |||||| | ||||||||||||| |||| ||||  |  ||||||||| |||  ||||||||| ||||||||||| |||||||||||||||||||||| |||    
T  35777846 ataaaacaagggtcttgttaactagtgccttcaggatactctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaa 35777747  T
Q  223 tgcactcagtacac 236  Q
    |||| ||| |||||    
T  35777746 tgcattcaatacac 35777733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 37138299 - 37138196
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||||||||||||||||||  | | ||||||||||||| | |||||||||||||| |||||||| ||||||| |||||||| |||||  ||||||||||     
T  37138299 gggtcttgttaacgagtgttctgg-ggcactctttaaggaaatcaaatttagcaactattcttttaaaaagtcaactattataatttccaatgcactcaa 37138201  T
Q  232 tacac 236  Q
    |||||    
T  37138200 tacac 37138196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 20394597 - 20394692
Alignment:
Q  123 ataaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||| | |||| |||||||||||||||| |   |||||||||||||||  ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  20394597 ataaaataagggttttgttaacgagtgtctccagagcactctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaattt 20394692  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 8297839 - 8297943
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||||||||||||||||| |  || ||||||||||||||||  ||||||||| ||||||||||| |||| || |||| |||||||||  |||||| |||     
T  8297839 gggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaa 8297938  T
Q  232 tacac 236  Q
    |||||    
T  8297939 tacac 8297943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 31174766 - 31174702
Alignment:
Q  155 gaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    |||||||||||||||||| | |||||| | ||||||||||| |||||||||||| ||||||||||    
T  31174766 gaggcactctttaagcatctaaaattttgtaattattcttttaaaaagttaactgttacaatttt 31174702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 41462020 - 41462103
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||||||||||||   |  ||||||||||||||| | | |||||| ||||||||||| ||||||| ||||||||||||||    
T  41462020 tcttgttaacgagtgtccctggagcactctttaagcattttatatttagtaattattcttttaaaaagtcaactattacaattt 41462103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 50341998 - 50341919
Alignment:
Q  137 ttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||||||||||  || |||||| | |||||||  ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  50341998 ttgttaacgagtgtc--cggggcactttgtaagcattccaaatttagtaattattcttttaaaaagtcaactattacaattt 50341919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 51834882 - 51834968
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||||||| |||| ||  || | ||||||||||||||   |||||||||||||||||||| ||||||| |||||||| |||||    
T  51834882 gggtcttgttaatgagtttccccgggacactctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataattt 51834968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 42370450 - 42370358
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||||||||| || | ||||||||||||||||| ||||   |||||||||||||| ||||||| || ||||  |||||| ||||||    
T  42370450 ggtcttgttaacgagtgtttttggggcactctttaagcataccaaaacaagcaattattcttt-aaaaagtaaaatattttaattttcaatgca 42370358  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 47560594 - 47560653
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattatt 191  Q
    |||||||||||||||||||||||||| |||||||||| |||  |||| | ||||||||||    
T  47560594 gggtcttgttaacgagtgtcttcgagacactctttaatcattccaaaataagcaattatt 47560653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 47995847 - 47995772
Alignment:
Q  160 actctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtaca 235  Q
    |||||||||||||   |||||||| ||||| ||||| |||||||||| |||||||||||| |||||| ||| ||||    
T  47995847 actctttaagcattctaaatttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaataca 47995772  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 50426989 - 50427043
Alignment:
Q  164 tttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||| |||||||||| |||||||||||  |||||| ||||||||||||||    
T  50426989 tttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaattt 50427043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 7444524 - 7444419
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaa-gttaactattacaatttttaatgcactca 230  Q
    ||||||||||||||||||    |||  |||| |||||||||  ||||||||| |||||| |||| ||||| || ||||||||||||||| |||||| |||    
T  7444524 gggtcttgttaacgagtgctcccgatacactttttaagcatcccaaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcattca 7444425  T
Q  231 gtacac 236  Q
     |||||    
T  7444424 atacac 7444419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 23136642 - 23136577
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaa 200  Q
    |||||||||||||||||| ||| |||||| ||||| |||| ||||| || ||||||||||| ||||    
T  23136642 tcttgttaacgagtgtctccgaagcactccttaagtatattaaattaagtaattattcttttaaaa 23136577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 24175535 - 24175443
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||||||||||||||| |   | ||||||||||||||   |||||||| || |||||||| |||| || ||||||||||||||| ||||||    
T  24175535 ggtcttgttaacgagtgtccttaggacactctttaagcatcctaaatttagtaaatattcttttaaaa-gtaaactattacaattttaaatgca 24175443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 39195862 - 39195771
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||||||| | || |||||||||||||| || | ||||||||  ||| || ||| |||| || ||||||||||||||| ||||||    
T  39195862 gtcttgttaacgagtgccctcaaggcactctttaaggatcttaaatttag-tatttttttttaaaaaggtcaactattacaattttcaatgca 39195771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 49084495 - 49084447
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||| ||||    
T  49084495 aaatttagtaattattcttttaaaaagtcaactattacaattttcaatg 49084447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 51736365 - 51736409
Alignment:
Q  175 caaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||    
T  51736365 caaatttagcaattattcttttaaaaagtcaactattataatttt 51736409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 25115374 - 25115315
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||| ||   |||||||| ||||||| ||| ||||||||||||||||||||||    
T  25115374 cactctttaagaatccaaaatttagtaattattattttaaaaagttaactattacaattt 25115315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 49400576 - 49400666
Alignment:
Q  127 aaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||| |||||||||||||||||| || |   ||||| |||||||||   |||||||| ||||||||||| ||||| | ||||||||||||||    
T  49400576 aaaaagggtcttgttaacgagtg-ctccagagcactatttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaattt 49400666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 23606021 - 23605979
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||| ||||||||||| |||||||||| |||||||||||    
T  23606021 aaatttagtaattattcttttaaaaagttaattattacaattt 23605979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 24981760 - 24981834
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaa 206  Q
    ||||||||||||||||||||   ||| |||| |||||  || |||||||||| || |||||||| ||||||||||    
T  24981760 gggtcttgttaacgagtgtccctgagacactttttaaagatttcaaatttagaaaatattctttaaaaaagttaa 24981834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 38945159 - 38945087
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcatat-caaatttagcaattattctttcaaaaagt 203  Q
    ||||||||||||||||||| |  || |||||||||||||| ||| |||||| |||||||||||| | |||||||    
T  38945159 tgggtcttgttaacgagtgcccccgcggcactctttaagc-tatccaaattaagcaattattctcttaaaaagt 38945087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 23230374 - 23230334
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcat 172  Q
    ||||||| ||||||||||||| |||| ||||||||||||||    
T  23230374 gggtcttattaacgagtgtctccgagacactctttaagcat 23230334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 23689877 - 23689941
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaat 223  Q
    ||||||||||  || | |||||||| ||||||||||| ||||| | ||||| |||||||||||||    
T  23689877 cactctttaaagattttaaatttagtaattattcttttaaaaaatcaactaatacaatttttaat 23689941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 37440838 - 37440886
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||| ||||||| ||| ||||||| ||||||||||||||| ||||    
T  37440838 aaatttagtaattattattttaaaaagtcaactattacaattttcaatg 37440886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 54700978 - 54700918
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctt 194  Q
    |||||||||||||||||| ||| | |||||||||||||| | ||| | || ||||||||||    
T  54700978 gtcttgttaacgagtgtcatcgggacactctttaagcattttaaaataagtaattattctt 54700918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 46093695 - 46093595
Alignment:
Q  126 aaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgc 225  Q
    ||||| ||||||||||||||||||  ||||   ||||||||||  |||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  46093695 aaaaaagggtcttgttaacgagtgctttcggaacactctttaatgatattaaatttagcaattattctttaaaaaagttaactattacaattttttatgc 46093596  T
Q  226 a 226  Q
    |    
T  46093595 a 46093595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 47638890 - 47638967
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||||||||||  ||||||| | ||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  47638890 cactctttaagcatactaaatttaactattatgcttttaaaaagttaactattacaatttttaatgcactcaatacac 47638967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 48180307 - 48180223
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||||||||| || | ||||||||||||||  | |||||| |||||||||||| ||||||| ||||||||||||||    
T  48180307 gtcttgttaacgagtgtctccgggacactctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaattt 48180223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 37708405 - 37708501
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcact 228  Q
    ||||||||||||| |||| |  ||||||||||||||||||||| ||| | |||||||| ||||| ||||||||||  ||| ||||||| ||||||||    
T  37708405 gggtcttgttaacaagtgcccccgaggcactctttaagcatattaaaataagcaattagtctttaaaaaagttaaacatttcaattttcaatgcact 37708501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 11132659 - 11132611
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  11132659 aaatttagcaattattatttcaaaaagttaactattacaattttcaatg 11132611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 29083990 - 29083944
Alignment:
Q  180 ttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  29083990 ttagtaattattcttttaaaaagttaactattacaatttttaatgca 29083944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 39551968 - 39551896
Alignment:
Q  157 ggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactca 230  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||    
T  39551968 ggcactatttaagcataccaaatttagcaattattcttttaaaaaatcaacta-tacaattttcaatacactca 39551896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 42846146 - 42846057
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcg-aggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    |||||||||||| |||||| || || | |||||||||||||||   |||||||| ||||||||||| ||||||| ||||||| |||||||    
T  42846146 tgggtcttgttagcgagtgcctccggatgcactctttaagcatcctaaatttagtaattattctttgaaaaagtcaactatttcaatttt 42846057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 45757897 - 45757965
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaa 200  Q
    ||||||||||||||||||||| ||   |||||||||||||| | ||||| |||||||||||||| ||||    
T  45757897 gggtcttgttaacgagtgtctccggatcactctttaagcatgttaaattaagcaattattctttaaaaa 45757965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 49362490 - 49362406
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||| || ||| ||||  ||||| ||||| |||  ||||||||  ||||||||||| ||||||||||||||||||||||    
T  49362490 ggtcttgttaatgaatgt-ttcggtgcactttttaaacatcccaaatttaataattattcttttaaaaagttaactattacaattt 49362406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 25299176 - 25299081
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||||||||||||  ||| ||||| ||||||||| || |||  || ||||||||||| |||||  |||  ||| ||||||| ||||||    
T  25299176 tgggtcttgttaacgagtgtccccgaagcactttttaagcatttctaataaagaaattattctttaaaaaaagtaaagatttcaattttcaatgca 25299081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 11623611 - 11623573
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagc 170  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  11623611 gggtcttgttaacgagtgtctccggggcactctttaagc 11623573  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 24313517 - 24313587
Alignment:
Q  130 atgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaa 200  Q
    |||| ||||||||||||||||| ||| |||||||||||| |||   ||||| | |||||||||||| ||||    
T  24313517 atggatcttgttaacgagtgtcctcggggcactctttaaacattctaaattaaacaattattctttaaaaa 24313587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 39651904 - 39651966
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttca 197  Q
    |||||||||| |||||||| |||||| ||||||| ||| | ||||| || |||||||||||||    
T  39651904 tcttgttaactagtgtcttggaggcagtctttaaacattttaaattaagtaattattctttca 39651966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 52308977 - 52309047
Alignment:
Q  125 aaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattcttt 195  Q
    |||||| | |||||||||||||||| |  || ||||||||||||||||| ||||   ||||||||||||||    
T  52308977 aaaaaaagagtcttgttaacgagtgcccccggggcactctttaagcataccaaaacaagcaattattcttt 52309047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 23642718 - 23642779
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctt 194  Q
    |||||||||||| ||||||| |  | ||||||||||||||| |||| | |||||||||||||    
T  23642718 ggtcttgttaactagtgtctcctggacactctttaagcataccaaaataagcaattattctt 23642779  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 26143091 - 26143132
Alignment:
Q  185 aattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||    
T  26143091 aattattcttttaaaaagtcaactattacaattttgaatgca 26143132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 47040162 - 47040073
Alignment:
Q  137 ttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||||||||||||||||  ||||||| || |||| || |||||  |||||  |||| ||||| || | ||||| |||||||||||||    
T  47040162 ttgttaacgagtgtcttcgaaacactcttaaaacataccacatttaataattaaacttttaaaaaatttattattataatttttaatgca 47040073  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 52249321 - 52249378
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaat 216  Q
    |||| |||||| |||  |||||||  ||||||||||| ||||||||||||||||||||    
T  52249321 cactttttaagtatacaaaatttaataattattcttttaaaaagttaactattacaat 52249378  T

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Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 62670 - 62560
Alignment:
Q  125 aaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||| ||||||||||||||||||||||| |  || ||||||||||||| ||| |||||| ||||||||||| ||||||| ||||||||| ||||| ||||    
T  62670 aaaatatgggtcttgttaacgagtgtctccagggtactctttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatg 62571  T
Q  225 cactcagtaca 235  Q
    || ||| ||||    
T  62570 cattcaataca 62560  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 15720037 - 15720121
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||||||| | ||| |||||||| ||||||| |||||||| |||||||||||| ||||||| ||||||||||||||    
T  15720037 gtcttgttaacgagtgtttccgaagcactcttcaagcataccaaatttatcaattattcttttaaaaagtcaactattacaattt 15720121  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 8208147 - 8208250
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    ||||||||||||||||||| |||   ||||||||||||||| | ||||||   ||||||||||| ||||||| || ||||||||||||||||||| |||     
T  8208147 gggtcttgttaacgagtgttttcagagcactctttaagcattttaaatttgaaaattattcttttaaaaagtcaattattacaatttttaatgcattcat 8208246  T
Q  232 taca 235  Q
    ||||    
T  8208247 taca 8208250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 18229712 - 18229654
Alignment:
Q  160 actctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||    
T  18229712 actctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaattt 18229654  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 16667433 - 16667344
Alignment:
Q  129 aatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||||| |||| ||||| || || ||||||||||||||||  ||||||||  ||||||||||| ||||||| || |||||||||||    
T  16667433 aatgggtctttttaaagagtgcctccggggcactctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaattt 16667344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 30501277 - 30501192
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||||||| |  |  ||||||||||||||||  ||||||||| ||||||||||| ||||||| || |||||||||||    
T  30501277 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaattt 30501192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 30541620 - 30541535
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||||||| |  |  ||||||||||||||||  ||||||||| ||||||||||| ||||||| || |||||||||||    
T  30541620 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaattt 30541535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 9276717 - 9276615
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||||||||||||||||||||||| || | |||| ||||||  ||||||||| ||||||| ||| ||||| | |||||||| |||||| |||||| |||     
T  9276717 gggtcttgttaacgagtgtcttcg-ggtattcttcaagcatcccaaatttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaa 9276619  T
Q  232 taca 235  Q
    ||||    
T  9276618 taca 9276615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 41583511 - 41583594
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaa 215  Q
    |||||||||||||||||| |  || | ||||||||||| ||  ||||||||| |||||||| ||||||||||||| ||||||||    
T  41583511 gggtcttgttaacgagtgcccccgggtcactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaa 41583594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 112622 - 112532
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||||||||||||| ||| ||||||||||||||||   ||| |||| |||||||||||  |||||| ||||  ||||||||| ||||    
T  112622 gtcttgttaacgagtgtcatcggggcactctttaagcatcataaaattagtaattattcttttgaaaagtcaactgatacaattttcaatg 112532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 34032228 - 34032142
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||||||||||||||| | | ||||||||||||||||   ||| | || ||||||||||| |||||||||| |||| ||||||    
T  34032228 gggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaattt 34032142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 30104772 - 30104876
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||| |||||||| |||| | ||| ||||||||||||||||  ||||||||| || |||| ||| ||||||| ||| ||||||||||  |||||| |||     
T  30104772 gggtattgttaacaagtgccctcggggcactctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaa 30104871  T
Q  232 tacac 236  Q
    |||||    
T  30104872 tacac 30104876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 40530565 - 40530469
Alignment:
Q  140 ttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||| | | ||||| |||||||||| ||| ||| |||||| ||||||| ||| |||||||||||||| ||||||| |||| || ||| |||||    
T  40530565 ttaacgagggccctcgagacactctttaaacatctcatatttagtaattattattttaaaaagttaactatcacaatttctaattcattcaatacac 40530469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 13480012 - 13480091
Alignment:
Q  158 gcactctttaagcatatcaaatttagcaattattcttt-caaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    ||||||||||||||| |||||||||| ||||||| |||  ||||| |||||||||| |||||| |||||| ||| |||||    
T  13480012 gcactctttaagcatttcaaatttagtaattattttttaaaaaaaattaactattataattttcaatgcattcaatacac 13480091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 34899272 - 34899180
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||| ||||||||||||||||  ||  ||||||||||||||  ||||| ||| ||||||||||| ||||||  || ||||||||||| |||||||    
T  34899272 gggttttgttaacgagtgtctcaga--cactctttaagcatcccaaatatagtaattattcttttaaaaagacaattattacaatttctaatgca 34899180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 2918735 - 2918649
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||| ||||||||||||| ||| | || ||||||||||||| |||||||||  ||||||| ||| |||| || |||||||| |||||    
T  2918735 gggttttgttaacgagtgcctttggggtactctttaagcatttcaaatttaataattattttttaaaaatgtcaactattataattt 2918649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 7719172 - 7719258
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||| |||||||||| |  || | ||||||||||||||| || |||||  ||||||||||| ||||| | ||||||||||||||    
T  7719172 gggtctttttaacgagtgcccccgggacactctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaattt 7719258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 32017531 - 32017462
Alignment:
Q  157 ggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||| |||||||||   |||||||||||||| ||||||| || |||| ||||||| ||||||    
T  32017531 ggcactctttaaacatatcaaaacaagcaattattctttaaaaaagtaaaatatttcaattttcaatgca 32017462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 8221134 - 8221194
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||||||||||||| | ||||||| ||||||||||| ||| |||||| ||| |||||    
T  8221134 aaatttagcaattattctcttaaaaagtcaactattacaactttcaatgcattcaatacac 8221194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 23117362 - 23117279
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||||||  |||| || | ||||||||||| | |||||||||| |||||||||   ||||||||| ||||||||||    
T  23117362 gtcttgttaacgagtgcattcggggtaatctttaagcattttaaatttagcagttattcttt-ttaaagttaacaattacaattt 23117279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 17098332 - 17098253
Alignment:
Q  124 taaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagt 203  Q
    |||||||  |||||||||||||||||||  || |||||||||||| |||  |||| | |||||||||| ||| |||||||    
T  17098332 taaaaaaaaggtcttgttaacgagtgtcgccggggcactctttaaacatcacaaaataagcaattattatttaaaaaagt 17098253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 24041158 - 24041092
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaa 201  Q
    |||||||||||||||| || || || |||||||||||||||||||||  | ||||||||||| |||||    
T  24041158 gtcttgttaacgagtg-ctccggggtactctttaagcatatcaaattatgaaattattctttaaaaaa 24041092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 3140787 - 3140869
Alignment:
Q  137 ttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    |||||||||||||| || | | || ||||||| |||   |||||||  ||||||||||| ||||||| |||||||||||||||    
T  3140787 ttgttaacgagtgtatttgggacattctttaaacatcataaatttaataattattcttttaaaaagtcaactattacaatttt 3140869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 18963812 - 18963874
Alignment:
Q  164 tttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||| || || ||||||| ||||||||||   |||||||||||||||||||||| ||||||    
T  18963812 tttaagaatctcgaatttagtaattattcttgagaaaagttaactattacaattttcaatgca 18963874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 967068 - 967139
Alignment:
Q  129 aatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaa 201  Q
    |||||||||||||||||||||||| ||  | |||||||||||||| ||||||  |  |||||||||| |||||    
T  967068 aatgggtcttgttaacgagtgtctccg-cgtactctttaagcataccaaattaggatattattctttaaaaaa 967139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 39177651 - 39177687
Alignment:
Q  133 ggtcttgttaacgagtgtcttcgaggcactctttaag 169  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  39177651 ggtcttgttaactagtgtctccgaggcactctttaag 39177687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 39382583 - 39382504
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactatt 211  Q
    ||||||||| |||||||| ||| |||  ||||||||||||||  |||||  | |||||||||||| |||||||||| ||||    
T  39382583 tgggtcttgctaacgagtttct-cgaaacactctttaagcattccaaatcaaacaattattcttttaaaaagttaaatatt 39382504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 27123241 - 27123346
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactca 230  Q
    ||||||||||||||||||| |  || ||||||||||||||||  ||||||||| ||| ||||||| ||||||| ||||||||||||||  |||||| | |    
T  27123241 tgggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaa 27123340  T
Q  231 gtacac 236  Q
    ||||||    
T  27123341 gtacac 27123346  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 28770444 - 28770549
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactca 230  Q
    ||||||||||||||||||| || || ||||||||||||||||  |||| |||| |||||||||||  |||||| ||||||||||||||  |||||| |||    
T  28770444 tgggtcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattca 28770543  T
Q  231 gtacac 236  Q
     |||||    
T  28770544 atacac 28770549  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 39321097 - 39321028
Alignment:
Q  155 gaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||| ||||    
T  39321097 gaggcactctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatg 39321028  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 28663275 - 28663173
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcag 231  Q
    |||||||||||||||||| | | ||||||||||||||||||   || ||||| ||||||||||| ||||||| ||||||||||||||| |||||| |||     
T  28663275 gggtcttgttaacgagtgccct-gaggcactctttaagcatcataactttag-aattattcttttaaaaagtcaactattacaattttcaatgcattcaa 28663178  T
Q  232 tacac 236  Q
    |||||    
T  28663177 tacac 28663173  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 35731280 - 35731351
Alignment:
Q  157 ggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcact 228  Q
    ||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||||||||||||  ||||||||    
T  35731280 ggcactctttaagcataccaaatttaacaactattcttttaaaaagtcaactattacaatttccaatgcact 35731351  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 21727542 - 21727458
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||| |  || || |||| ||||||||||| || ||||||| ||||||||||| ||||||| ||||||||||||||    
T  21727542 gtcttgttaacgaatacctccggggcattctttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaattt 21727458  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 3692883 - 3692949
Alignment:
Q  170 catatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||| ||||||||||||||||||||| ||||| | ||||||||||||||  |||||||||| |||||    
T  3692883 cataccaaatttagcaattattcttttaaaaaatcaactattacaatttccaatgcactcaatacac 3692949  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 25886138 - 25886225
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    |||| |||||||| |||||| ||| || ||||||||| ||| | |||||||| ||||||||| | | ||||| |||||||||||||||    
T  25886138 gggttttgttaactagtgtcctcggggtactctttaaacattttaaatttagaaattattctcttagaaagtcaactattacaatttt 25886225  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 7968670 - 7968600
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactc 229  Q
    |||| |||||||||   |||||||||||||||||||| ||||| | ||||||||| | |||||||||||||    
T  7968670 cactttttaagcatcataaatttagcaattattcttttaaaaaatcaactattaccacttttaatgcactc 7968600  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 35496717 - 35496607
Alignment:
Q  126 aaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgc 225  Q
    ||||| |||||||||| |||| ||||  ||  |||||||||||||||   |||||||| || |||  ||| ||||||| ||||||||||||||| |||||    
T  35496717 aaaaaagggtcttgtttacgaatgtccccggagcactctttaagcatccaaaatttagtaactatatttttaaaaagtcaactattacaattttcaatgc 35496618  T
Q  226 actcagtacac 236  Q
    | ||| |||||    
T  35496617 attcattacac 35496607  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 44537309 - 44537395
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||| ||||||||||| |   || |||||||||||||||  || |||||| ||||||||||| ||||||| |||||||| |||||    
T  44537309 gggtctcgttaacgagtgcccctgatgcactctttaagcatcccatatttagtaattattcttttaaaaagtcaactattataattt 44537395  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 18801012 - 18801095
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    ||||||||| ||||| | |||  | |||||||||| || |||||||||||||||| |||||  |||||| |||||||||||||||    
T  18801012 tcttgttaatgagtgccctcggagaactctttaaggat-tcaaatttagcaattactcttttcaaaagtcaactattacaatttt 18801095  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 29711631 - 29711539
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||||||||| |||||||| | ||| ||||||| ||| | |||||||| |||| |||||| ||||| | ||| |||| |||||| ||||    
T  29711631 gggtcttgttaacgtgtgtcttcaaagcattctttaaacatcttaaatttagaaatttttcttttaaaaaatcaacaattataattttcaatg 29711539  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 44592878 - 44592926
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||  ||||||||||| ||||||||||||||||||||||| ||||    
T  44592878 aaatttaataattattcttttaaaaagttaactattacaattttcaatg 44592926  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 207
Target Start/End: Complemental strand, 26239635 - 26239604
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaac 207  Q
    ||||||||||||||||||||||||||||||||    
T  26239635 aaatttagcaattattctttcaaaaagttaac 26239604  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 37158450 - 37158400
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||| ||||||| ||| ||||||| ||||||||||||||| ||||||    
T  37158450 aaatttagtaattattattttaaaaagtcaactattacaattttcaatgca 37158400  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 43234758 - 43234844
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||||||||||||||   ||| | || |||||||||||   | |||||| ||||||||||| ||||| | ||||||||||||||    
T  43234758 gggtcttgttaacgagtgctctcgggacattctttaagcatcctatatttagtaattattcttttaaaaaataaactattacaattt 43234844  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 34299890 - 34299813
Alignment:
Q  123 ataaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaa 200  Q
    |||||||| |||||||||||||||||| |  || |||||| |||||||||   | ||| |||||||||||||| ||||    
T  34299890 ataaaaaaagggtcttgttaacgagtgcccccggggcactttttaagcatgctagattaagcaattattctttaaaaa 34299813  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 47507578 - 47507615
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaag 169  Q
    ||||||||||||||||||||| || |||||||||||||    
T  47507578 gggtcttgttaacgagtgtctccggggcactctttaag 47507615  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 19915081 - 19915034
Alignment:
Q  123 ataaaaaatgggtcttgttaacgagtgtcttcgaggcactctttaagca 171  Q
    |||||| ||||||||||||||||||| ||| ||| ||||||||||||||    
T  19915081 ataaaatatgggtcttgttaacgagtatctccga-gcactctttaagca 19915034  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 11721013 - 11720929
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    ||||||||||||||||||| ||| |||||||||| |||   ||||||| |||||||||||| || |||| |||||||||||||||    
T  11721013 tcttgttaacgagtgtctttgagtcactctttaaacatcctaaatttaacaattattcttttaagaagtcaactattacaatttt 11720929  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 19293591 - 19293505
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    ||||||| |||||||||||  ||| | ||||||||||||||   ||||||| |||||||| ||| ||||||||||||||||||||||    
T  19293591 gggtcttattaacgagtgttctcgggacactctttaagcatcctaaatttaacaattattattttaaaaagttaactattacaattt 19293505  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 17215819 - 17215727
Alignment:
Q  134 gtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||||||||||  |   |||| ||||||||| | |||||||| ||||||| ||| ||||||| ||||||||||||||| ||||||    
T  17215819 gtcttgttaacgagtgtctcaggtacactttttaagcatttaaaatttagtaattatttttttaaaaagtcaactattacaattttcaatgca 17215727  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 1840976 - 1841055
Alignment:
Q  157 ggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgcactcagtacac 236  Q
    |||||||||||||||||| |||||||  ||||||||||| ||||| | ||||||||||||||  |||||| ||| |||||    
T  1840976 ggcactctttaagcatattaaatttaataattattcttttaaaaaatcaactattacaatttccaatgcattcaatacac 1841055  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 30739572 - 30739643
Alignment:
Q  137 ttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaact 208  Q
    ||||||||||||||||||| ||||||||||||| ||   |||||||| ||||||||| | ||||||||||||    
T  30739572 ttgttaacgagtgtcttcggggcactctttaagtattctaaatttagtaattattctattaaaaagttaact 30739643  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 30509283 - 30509353
Alignment:
Q  131 tgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaa 201  Q
    |||||||||||||||||||||| ||   ||||||||||||||| |||| | |||||||||||||| |||||    
T  30509283 tgggtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaa 30509353  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 9301876 - 9301939
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattcttt 195  Q
    |||||||||||||||||||| |||||  |||||||||| || | |||||||| |||||||||||    
T  9301876 gggtcttgttaacgagtgtcatcgagatactctttaaggatcttaaatttagtaattattcttt 9301939  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 3766270 - 3766336
Alignment:
Q  157 ggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaat 223  Q
    ||||||||||||||||  ||||||| | ||||||||||| ||||||| || ||||||||||| ||||    
T  3766270 ggcactctttaagcatcccaaatttggaaattattcttttaaaaagtcaattattacaatttataat 3766336  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 2864876 - 2864930
Alignment:
Q  162 tctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaattt 218  Q
    |||||||| || |||||||||||||||||| |||||||||  |||||||||||||||    
T  2864876 tctttaaggatttcaaatttagcaattattttttcaaaaa--taactattacaattt 2864930  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 26669420 - 26669330
Alignment:
Q  127 aaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    ||||||||| ||||||||| |||| |  ||  |||||||||||||  ||| |||||  ||||||||||| ||||||| |||||||||||||||    
T  26669420 aaaatgggttttgttaacgggtgtttagga--cactctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaatttt 26669330  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 23399122 - 23399170
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    |||||||| ||||||||||| |||||||||||||||| |||||| ||||    
T  23399122 aaatttagaaattattcttttaaaaagttaactattataattttcaatg 23399170  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 35229260 - 35229331
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagt 203  Q
    |||||||||||||||||| |  || | ||||||||||| |   |||||||||| ||||||||||||||||||    
T  35229260 gggtcttgttaacgagtgcccccgggacactctttaaggaacccaaatttagcgattattctttcaaaaagt 35229331  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 15588623 - 15588717
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    ||||||||||||| ||||  | |||| || |||||||| ||||||||||||  || |||||||| ||||| |||| | |||||| ||| ||||||    
T  15588623 gggtcttgttaacaagtgcttccgagacattctttaaggatatcaaatttataaaatattctttaaaaaaattaaatgttacaaatttcaatgca 15588717  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 31854762 - 31854819
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaatta 189  Q
    ||||||| |||||||||| |  |||| |||||||||||||| |||||||||| |||||    
T  31854762 gggtcttattaacgagtgcccccgagacactctttaagcatctcaaatttagtaatta 31854819  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 34232090 - 34232001
Alignment:
Q  135 tcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    ||||||||||||||| |   |||||||||||||| ||| | |||||||  ||||||||||| |||||  ||||| || ||||||| ||||    
T  34232090 tcttgttaacgagtgccccggaggcactctttaaccatcttaaatttaataattattctttaaaaaaaataactgttgcaattttcaatg 34232001  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 21203028 - 21202988
Alignment:
Q  132 gggtcttgttaacgagtgtcttcgaggcactctttaagcat 172  Q
    ||||||||||||||||| |||| |||| |||||||||||||    
T  21203028 gggtcttgttaacgagtctctttgaggtactctttaagcat 21202988  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 1373 - 1463
Alignment:
Q  127 aaaatgggtcttgttaacgagtgtcttcgaggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttt 219  Q
    ||||||||| ||||||||| |||| |  ||  |||||||||||||  ||| |||||  ||||||||||| ||||||| |||||||||||||||    
T  1373 aaaatgggttttgttaacgggtgtttagga--cactctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaatttt 1463  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 103762 - 103693
Alignment:
Q  157 ggcactctttaagcatatcaaatttagcaattattctttcaaaaagttaactattacaatttttaatgca 226  Q
    |||||||||||||||| |   |||||| ||||||||||| |||||||  | |||||||||||||||||||    
T  103762 ggcactctttaagcatctttgatttagtaattattcttttaaaaagtcgaatattacaatttttaatgca 103693  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 1026 - 978
Alignment:
Q  176 aaatttagcaattattctttcaaaaagttaactattacaatttttaatg 224  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  1026 aaatttagcaattgttcttttaaaaagtcaactattacaattttcaatg 978  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 189064 - 189116
Alignment:
Q  159 cactctttaagcatatcaaatttagcaattattctttcaaaaagttaactatt 211  Q
    |||||||||||||| | ||| | |||||||||||||| |||||||||| ||||    
T  189064 cactctttaagcattttaaaataagcaattattctttaaaaaagttaaatatt 189116  T

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