View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3001_high_45 (Length: 227)

Name: NF3001_high_45
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3001_high_45
NF3001_high_45
[»] chr6 (1 HSPs)
chr6 (7-223)||(31274224-31274440)
[»] chr1 (2 HSPs)
chr1 (5-208)||(26215684-26215887)
chr1 (101-182)||(40336374-40336455)
[»] chr3 (4 HSPs)
chr3 (5-206)||(19428623-19428824)
chr3 (94-185)||(23370034-23370125)
chr3 (96-191)||(8838296-8838391)
chr3 (97-186)||(4642849-4642938)
[»] chr2 (1 HSPs)
chr2 (96-192)||(13132856-13132952)
[»] chr8 (1 HSPs)
chr8 (106-167)||(44287759-44287820)
[»] chr7 (1 HSPs)
chr7 (94-183)||(8854495-8854584)
[»] chr5 (1 HSPs)
chr5 (94-186)||(26464721-26464813)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 31274224 - 31274440
Alignment:
Q  7 gaatatagggcacttgcagctgctacatgtgaactttagtggctgctctatttgcttcaggatttgcagcttcaaacctctaaattgcatgtgctatact 106  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31274224 gaatatagggcacttgcagctgctacatgcgaacttcagtggctgctttatttgcttcaggatttgcagcttcaaacctctaaattgcatgtgttatact 31274323  T
Q  107 gtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgtcaccttgtacaagacaaacttca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31274324 gtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaacgcacaaaacatctagagattgattgtcaccttgtacaggacaaacttca 31274423  T
Q  207 agcattaaactccttcc 223  Q
    ||||| |||||||||||    
T  31274424 agcatgaaactccttcc 31274440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 26215684 - 26215887
Alignment:
Q  5 cagaatatagggcacttgcagctgctacatgtgaactttagtggctgctctatttgcttcaggatttgcagcttcaaacctctaaattgcatgtgctata 104  Q
    |||||||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  26215684 cagaatatagggcacttgcagctgctacatgtgaactccagtggttactctatttgcttcaggatttgcagcttcaaacctctaagttgcttgtgttata 26215783  T
Q  105 ctgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgtcaccttgtacaagacaaactt 204  Q
     ||||||||||||||  |||| |||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||| | | |||||||    
T  26215784 ttgtgacaatcaaagcactttacacatttctgcaaacccatttttccatgaacgcacaaaacatctagagattgattgtcatcttgtagagggcaaactt 26215883  T
Q  205 caag 208  Q
    ||||    
T  26215884 caag 26215887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 40336374 - 40336455
Alignment:
Q  101 tatactgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattg 182  Q
    ||||||||||||||||||||||  | || || ||||| || ||  | ||||||||| ||||||||||  |||||||||||||    
T  40336374 tatactgtgacaatcaaagtgcacttcatatagctgctaatcctgtgtttcatgaacgcacaaaacacttagagattgattg 40336455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 19428623 - 19428824
Alignment:
Q  5 cagaatatagggcacttgcagctgctacatgtgaactttagtggctgctctatttgcttcaggatttgcagcttcaaacctctaaattgcatgtgctata 104  Q
    |||||||||| || ||||||||||| |||||||||||| | ||  | |||||| || ||||||||| ||||||||||||| |||| |||| |||| | ||    
T  19428623 cagaatatagagctcttgcagctgccacatgtgaacttcaatgtttactctatctggttcaggattcgcagcttcaaaccactaagttgcttgtgttgta 19428722  T
Q  105 ctgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgtcaccttgtacaagacaaactt 204  Q
     |||||||||||||||||  ||| |||||||||||||||| | || |||||| | || || ||| |||||| ||| ||||| ||||||  ||| ||||||    
T  19428723 ttgtgacaatcaaagtgcactgctcattgctgcaaacccagtcttccatgaacgtaccaagcatttagagactgactgtcatcttgtatgagataaactt 19428822  T
Q  205 ca 206  Q
    ||    
T  19428823 ca 19428824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 23370125 - 23370034
Alignment:
Q  94 catgtgctatactgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgtca 185  Q
    |||||| |||| | ||||||||||||| |||||   ||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||    
T  23370125 catgtgttataatatgacaatcaaagtactttgtgtattgctgcaaacccagttttccatgaacgcacaaagcatctagagattgattgtca 23370034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 8838296 - 8838391
Alignment:
Q  96 tgtgctatactgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgtcaccttgt 191  Q
    |||||| || ||||| |||||||||||| ||||||||||  | || ||  ||||||||||| | || |||||||| ||||||||||||||| ||||    
T  8838296 tgtgctttattgtgataatcaaagtgctatgcacattgcatccaatcctgtttttcatgaaagaaccaaacatcttgagattgattgtcacattgt 8838391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 4642938 - 4642849
Alignment:
Q  97 gtgctatactgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgtcac 186  Q
    ||||| |||||||| || |||||||||||||||||||| || |||| | | ||||||||| | || || || || |||||||||||||||    
T  4642938 gtgctttactgtgataaccaaagtgctttgcacattgcagccaaccgagtatttcatgaaagaaccaagcaccttgagattgattgtcac 4642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 13132856 - 13132952
Alignment:
Q  96 tgtgctatactgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgtcaccttgta 192  Q
    |||||| || ||||| |||||||||||| ||||||||||  |||| ||  ||||||||||| | || |||||||| || ||||| |||||| |||||    
T  13132856 tgtgctttattgtgataatcaaagtgctatgcacattgcatcaaatcctgtttttcatgaaagaactaaacatcttgaaattgactgtcacattgta 13132952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 44287820 - 44287759
Alignment:
Q  106 tgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaaca 167  Q
    |||||||||||||| ||| ||||||||||||| |||||| | || |||||| | ||||||||    
T  44287820 tgtgacaatcaaagcgctctgcacattgctgcgaacccagtgttccatgaaagaacaaaaca 44287759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 8854495 - 8854584
Alignment:
Q  94 catgtgctatactgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgt 183  Q
    |||||||| |||||||| || ||||||||||| |||||||| || |||| | |||| |||||| | || || || || ||||||||||||    
T  8854495 catgtgctttactgtgataaccaaagtgctttacacattgcagccaacctagttttccatgaaagaaccaagcaccttgagattgattgt 8854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 26464813 - 26464721
Alignment:
Q  94 catgtgctatactgtgacaatcaaagtgctttgcacattgctgcaaacccaatttttcatgaatgcacaaaacatctagagattgattgtcac 186  Q
    |||||||| || ||||| || || |||||| | |||||||| ||||| ||| | ||||||||| | ||||||||||| || ||||| ||||||    
T  26464813 catgtgctttattgtgataaccagagtgctcttcacattgcagcaaatccagtgtttcatgaaaggacaaaacatctggaaattgactgtcac 26464721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University