View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_high_7 (Length: 482)
Name: NF3001_high_7
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 26734935 - 26735389
Alignment:
| Q |
18 |
gctctttctaacaatttatttaccgggaggattccggcgtccatgaagaatctccgatcactgcagacgctgttactcgatgccaatcagtttctcggag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734935 |
gctctttctaacaatttatttaccgggaggattccggcgtccatgaagaatctccgatcactgcagacgctgttactcgatgccaatcagtttctcggag |
26735034 |
T |
|
| Q |
118 |
aaattccggcagaggtctttgctttaccggtgttgactagaatcaatataagtggcaataatctcaccggtggaattccaaagacggttactcaatgtag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26735035 |
aaattccggcagaggtctttgctttaccggtgttgactagaatcaacataagtggcaataatctcactggtggaattccaaagacggttactcaatgtag |
26735134 |
T |
|
| Q |
218 |
ttcactgactgcagttgacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26735135 |
ttcactgactgcagttgacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcat |
26735234 |
T |
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| Q |
318 |
aataacatatctgggaaaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacag |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26735235 |
aatagcatatctgggaaaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacag |
26735334 |
T |
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| Q |
418 |
gtggtcagtttttggtcttcaacgaccggtcatttgccggaaatcctagcctatg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26735335 |
gtggtcagtttttggtcttcaacgaccggtcatttgccggaaatcctagcctatg |
26735389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 26726621 - 26727075
Alignment:
| Q |
18 |
gctctttctaacaatttatttaccgggaggattccggcgtccatgaagaatctccgatcactgcagacgctgttactcgatgccaatcagtttctcggag |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
26726621 |
gctctttctaacaatttatttaccgggaggatttcggcgtccatgaagaatctccgatcactgcagactctgttactcgacgccaatcagtttgtcggag |
26726720 |
T |
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| Q |
118 |
aaattccggcagaggtctttgctttaccggtgttgactagaatcaatataagtggcaataatctcaccggtggaattccaaagacggttactcaatgtag |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
26726721 |
aaattccgacagaggtctttgctttaccggtgttgactagaattaacataagtggcaacaatctcactggtggaattccaaagacggttactcaatgtag |
26726820 |
T |
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| Q |
218 |
ttcactgactgcagttgacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcat |
317 |
Q |
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| || |||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |
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| T |
26726821 |
tacattgacagccgttgacttcagcctaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggtgctaaacattttgaatgtttcgcat |
26726920 |
T |
|
| Q |
318 |
aataacatatctgggaaaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacag |
417 |
Q |
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|||| |||||| ||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
26726921 |
aatagcatatcggggcaaatccccaatgatattagattcatgatgagtctaacgacgctggatttatcttacaacaatttcaccggaattgtccccaccg |
26727020 |
T |
|
| Q |
418 |
gtggtcagtttttggtcttcaacgaccggtcatttgccggaaatcctagcctatg |
472 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||| |||||| |||| |
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|
| T |
26727021 |
gtggtcagtttttggtcttcaacgaccgttcatttgcgggaaaccctagcttatg |
26727075 |
T |
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