View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_high_9 (Length: 450)
Name: NF3001_high_9
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 32844688 - 32844266
Alignment:
| Q |
19 |
ttatgtgccggtgtttcttatactatttatagcagccgggtgtttttgtacaaagtcatgattaaaatttgaaagtaaaacagaaattgacatgtatgtt |
118 |
Q |
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| T |
32844688 |
ttatgtgccggtgtttcttatactatttatagcagccgggtgtttttgtacaaagtcatgattaaaatttgaaagtaaaacagatattgacatgtatgtt |
32844589 |
T |
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| Q |
119 |
tatggtatgctatatatgtgcttcttttgatcatggttcagcattcctagctatcaatttgtatgaaattaatagtaacaatgttagattatgatcaatc |
218 |
Q |
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| T |
32844588 |
tatggtatgctatatatgtgcttcttttgatcatggttcagcattcctagctatcaatttgtatgaaattaatagtaacaatgttagattatgatcaatc |
32844489 |
T |
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| Q |
219 |
tggtggattgttaattgtttgaaagtggttctgtttctggttttcagctgaggtcctctttcatggattttaaaagcaacaaaaggaactcgtgtaattc |
318 |
Q |
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| T |
32844488 |
tggtggattgttaattgtttgaaagtggttctgtttctggttttcagctgaggtcctctttcatggattttaaaagcaacaaaaggaactcgtgtaattc |
32844389 |
T |
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| Q |
319 |
tgagatagctgatgctgaagcgaggaggttgagactcttggctgagaaggaaaatgtatgtagaaatgtcgaatctaaccaccaaataaaagcacagttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844388 |
tgagatagctgatgctgaagcgaggaggttgagactcttggctgagaaggaaaatgtatgtagaaatgtcgaatctaaccaccaaataaaagcacagttg |
32844289 |
T |
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| Q |
419 |
caaaagcaacttcagagtattat |
441 |
Q |
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| T |
32844288 |
caaaagcaacttcagagtattat |
32844266 |
T |
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