View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_12 (Length: 445)
Name: NF3001_low_12
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 28471764 - 28472193
Alignment:
| Q |
1 |
tgaatttcgcagcaacgctgaaatcggtgaagcatatcttatcatgttaatgttgtcgttgtcatcaaaatccaaaagcaaagcaccaattccattaggt |
100 |
Q |
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| T |
28471764 |
tgaatttcgcagcaacgctgaaatcggtgaagcatatcttatcatgttaatgttgtcgttgtcatcgaaatccaaaagcaaagcaccaattccattaggt |
28471863 |
T |
|
| Q |
101 |
ttcagaatacgttcaacttcaaggacaaccaatgcagggacagcaacttttcccaaatccttggacaaaacaaagtcgaacgattcatcgtggtgatgat |
200 |
Q |
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| T |
28471864 |
ttcagaatacgttcaacttcaaggacaaccaatgcagggacagcaacttttcccaaatccttggacaaaacaaagtcgaacgattcatcgtggtgatgat |
28471963 |
T |
|
| Q |
201 |
caagcgagtaaacaaaattcttcttgttgaatgagaaaacacgatggttaatcacattagagaaaccaagtttcttcagtgtggaaacagctatgtttga |
300 |
Q |
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| T |
28471964 |
caagcgagtaaacaaaattcttcttgttgaatgagaaaacacgatggttaatcacattagtgaaaccaagtttcttcagtgtggaaacagctatgtttga |
28472063 |
T |
|
| Q |
301 |
agtttcaccaatacaaagagtttctgcttcgaaattcaataaccgttcaccttttagttctttgacaatacttgaaaccaagttgatttcttttttgcaa |
400 |
Q |
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| T |
28472064 |
agtttcaccaatacaaagagtttctgcttcgaaattcaataaccgttcaccttttagttctttgacaatacttgaaaccaagttgatttcttttttgcaa |
28472163 |
T |
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| Q |
401 |
ctcaatgaatcaaaggaaccccaaaaactg |
430 |
Q |
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| T |
28472164 |
ctcaatgaatcaaaggaaccccaaaaactg |
28472193 |
T |
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Back To:
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 40806300 - 40806240
Alignment:
| Q |
83 |
gcaccaattccattaggtttcagaatacgttcaacttcaaggacaaccaatgcagggacag |
143 |
Q |
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| T |
40806300 |
gcaccaattccattaggcttaagaacacgttcaacctcaagaacaagcaaagcagggacag |
40806240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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